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Astrocyte
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Milestone due date
Resolve "Make param.genomeLocation have full path"
cellranger_count!13
· created
Mar 10, 2019
by
Gervaise Henry
Put on Astrocyte Production (1.0.0)
Closed
0
updated
Mar 10, 2019
Updated Zenodo id
0 of 7 checklist items completed
cellranger_count!77
· created
Aug 15, 2020
by
Venkat Malladi
2.2.0
To Do
Closed
3
updated
Aug 15, 2020
WIP: Resolve "Add fragment size distribution"
atacseq_analysis!23
· created
Jun 02, 2020
by
Holly Ruess
Version 2.0
master
enhancment
Closed
0
updated
Jun 02, 2020
Resolve "TSS enrichment score"
0 of 6 checklist items completed
atacseq_analysis!21
· created
May 28, 2020
by
Holly Ruess
Version 2.0
master
enhancment
Closed
0
updated
May 28, 2020
Resolve "Add FRiP score"
0 of 6 checklist items completed
atacseq_analysis!19
· created
May 13, 2020
by
Holly Ruess
Version 2.0
master
enhancment
Closed
1
updated
May 13, 2020
Update main.nf to replace 'singularity exec' with 'singularity run' to avoid...
sra_pipeline!49
· created
Feb 06, 2020
by
Jonathan Gesell
Singularity 2.0.0 Compatability
Bug fixes
Closed
0
updated
Feb 06, 2020
Develop
cellranger_mkfastq!58
· created
Jan 06, 2020
by
Gervaise Henry
v2.1.5
master
Closed
0
updated
Jan 06, 2020
WIP: Resolve "Fix Trim Reads"
atacseq_analysis!6
· created
Dec 11, 2019
by
Holly Ruess
Version 2.0
master
enhancment
Closed
0
updated
Dec 11, 2019
WIP: Resolve "Fix Trim Reads"
atacseq_analysis!5
· created
Dec 11, 2019
by
Holly Ruess
Version 2.0
master
enhancment
Closed
0
updated
Dec 11, 2019
WIP: Resolve "Fix Trim Reads"
atacseq_analysis!4
· created
Dec 11, 2019
by
Holly Ruess
Version 2.0
master
enhancment
Closed
0
updated
Dec 11, 2019
WIP: Resolve "Remove unnecessary columns from design file"
atacseq_analysis!1
· created
Dec 04, 2019
by
Holly Ruess
Version 2.0
master
Closed
0
updated
Dec 04, 2019
Remove publish dirs for intermediate processes
cellranger_mkfastq!55
· created
Nov 07, 2019
by
Gervaise Henry
v2.1.5
enhancement
Closed
0
updated
Nov 07, 2019
WIP: Aws
sra_pipeline!41
· created
Oct 08, 2019
by
Jonathan Gesell
AWS Functionality
Updates
testing
Closed
0
updated
Oct 08, 2019
WIP: Resolve "Testing fails on new update"
chipseq_analysis!59
· created
Sep 16, 2019
by
Venkat Malladi
1.1.1
master
bug
Closed
0
updated
Sep 16, 2019
Remove spaces from design file
cellranger_mkfastq!52
· created
Aug 29, 2019
by
Jeremy Mathews
v2.1.5
bug
confirmed
Closed
0
updated
Aug 29, 2019
Resolve "Add pytest to CI"
cellranger_count!50
· created
Jul 23, 2019
by
Gervaise Henry
v1.1.0
To Do
documentation
Closed
0
updated
Jul 23, 2019
Resolve "Add pytest to CI"
cellranger_count!49
· created
Jul 22, 2019
by
Jeremy Mathews
v1.1.0
To Do
documentation
Closed
0
updated
Jul 23, 2019
Update gitignore with nextflow and update software reference test
chipseq_analysis!51
· created
Jul 10, 2019
by
Jeremy Mathews
1.0.6
master
enhancement
Closed
0
updated
Jul 10, 2019
Resolve "Add MultiQC"
cellranger_count!46
· created
Jun 28, 2019
by
Gervaise Henry
v1.1.0
To Do
enhancement
Closed
0
updated
Jun 28, 2019
Add MultiQC to output. Add version and reference material. fix README
cellranger_count!44
· created
Jun 27, 2019
by
Jeremy Mathews
v1.1.0
To Do
enhancement
Closed
0
updated
Jun 28, 2019
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