Merge requests · Astrocyte

Develop

cellranger_mkfastq!66 · created Jun 20, 2020 by Gervaise Henry v2.1.5 master
updated Jun 20, 2020
Develop

cellranger_mkfastq!65 · created Jun 20, 2020 by Gervaise Henry v2.1.5 master
updated Jun 20, 2020
mkfastq run on high power node, version 2.1.1

cellranger_mkfastq!64 · created Jun 20, 2020 by Gervaise Henry v2.1.5 master
updated Jun 20, 2020
Develop 7 of 8 checklist items completed

cellranger_mkfastq!63 · created Jun 20, 2020 by Gervaise Henry v2.1.5 master
updated Jun 20, 2020
De containerize 3 of 8 checklist items completed

cellranger_mkfastq!62 · created Jun 20, 2020 by Gervaise Henry v2.1.5
updated Jun 20, 2020
Update 6 of 8 checklist items completed

cellranger_mkfastq!61 · created Jun 20, 2020 by Gervaise Henry v2.1.5
updated Jun 20, 2020
Resolve "Annotate peaks" 5 of 6 checklist items completed

atacseq_analysis!26 · created Jun 11, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jun 11, 2020
Resolve "Blacklist of regions" 5 of 5 checklist items completed

atacseq_analysis!25 · created Jun 09, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jun 09, 2020
Resolve "Add fragment size distribution" 4 of 5 checklist items completed

atacseq_analysis!24 · created Jun 02, 2020 by Venkat Malladi Version 2.0 master
enhancment
- Merged
- 3
updated Jun 09, 2020
WIP: Resolve "Add fragment size distribution"

atacseq_analysis!23 · created Jun 02, 2020 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Jun 02, 2020
Resolve "TSS enrichment score" 5 of 5 checklist items completed

atacseq_analysis!22 · created May 28, 2020 by Venkat Malladi Version 2.0 master
enhancment
updated May 28, 2020
Resolve "TSS enrichment score" 0 of 6 checklist items completed

atacseq_analysis!21 · created May 28, 2020 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated May 28, 2020
Develop

cellranger_count!70 · created May 25, 2020 by Gervaise Henry v2.1.1 master
updated May 25, 2020
Resolve "Add FRiP score" 5 of 5 checklist items completed

atacseq_analysis!20 · created May 13, 2020 by Venkat Malladi Version 2.0 master
enhancment
updated May 13, 2020
Resolve "Add FRiP score" 0 of 6 checklist items completed

atacseq_analysis!19 · created May 13, 2020 by Holly Ruess Version 2.0 master
enhancment
- Closed
- 1
updated May 13, 2020
Develop 1 of 7 checklist items completed

cellranger_count!67 · created Apr 20, 2020 by Gervaise Henry v2.1.1 master
updated Apr 20, 2020
Add ulimit -u to all cellranger processes 2 of 7 checklist items completed

cellranger_count!66 · created Apr 20, 2020 by Gervaise Henry v2.1.1
Doing To Do bug confirmed critical
updated Apr 20, 2020
Resolve "Paired-end Diffbind peaks gives different answer" after changing random 2 of 2 checklist items completed

chipseq_analysis!69 · created Apr 17, 2020 by Venkat Malladi 1.1.0 master
Test bug
updated Apr 20, 2020
Resolve "Containerize"

cellranger_count!62 · created Apr 15, 2020 by Gervaise Henry v2.1.1
Doing enhancement
updated Apr 15, 2020
Resolve "Update params to current standards"

cellranger_count!61 · created Apr 14, 2020 by Gervaise Henry v2.1.1
Doing enhancement
updated Apr 15, 2020