Merge requests · Astrocyte

Resolve "Make param.genomeLocation have full path"

cellranger_count!13 · created Mar 10, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
- Closed
updated Mar 10, 2019
Resolve "Move untarBCL code into a bash script"

cellranger_mkfastq!34 · created May 24, 2019 by Jeremy Mathews v1.2.0
To Do enhancement
- Closed
updated May 24, 2019
Resolve "redirect_output"

cellranger_mkfastq!4 · created Mar 29, 2019 by Jonathan Gesell master
- Closed
updated Apr 05, 2019
Resolve "TSS enrichment score" 0 of 6 checklist items completed

atacseq_analysis!21 · created May 28, 2020 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated May 28, 2020
Resolve "Update to bicfbase:1.1"

sra_pipeline!38 · created Oct 01, 2019 by Jonathan Gesell
Updates
- Closed
updated Oct 01, 2019
Revert to origional vizapp

cellranger_mkfastq!49 · created Aug 27, 2019 by Gervaise Henry
- Closed
updated Aug 27, 2019
Update CHANGELOG.md

cellranger_mkfastq!22 · created Apr 26, 2019 by Gervaise Henry master
- Closed
updated Apr 26, 2019
Update CHANGELOG.md with new v1.1.0 change information.

sra_pipeline!60 · created Jun 17, 2020 by Jonathan Gesell
Updates
- Closed
updated Jun 17, 2020
Update design_example.txt

chipseq_analysis!36 · created May 02, 2019 by Spencer Barnes master
- Closed
updated May 02, 2019
Updated fastqc for better multithreading, updated module lists.

cellranger_mkfastq!9 · created Apr 11, 2019 by Jonathan Gesell master
enhancement
- Closed
updated Apr 12, 2019
Updated to most recent images

sra_pipeline!39 · created Oct 01, 2019 by Jonathan Gesell
Updates
- Closed
updated Oct 01, 2019
Updated Zenodo id 0 of 7 checklist items completed

cellranger_count!77 · created Aug 15, 2020 by Venkat Malladi 2.2.0
To Do
- Closed
- 3
updated Aug 15, 2020
Update gitignore with nextflow and update software reference test

chipseq_analysis!51 · created Jul 10, 2019 by Jeremy Mathews 1.0.6 master
enhancement
- Closed
updated Jul 10, 2019
Update main.nf to replace 'singularity exec' with 'singularity run' to avoid...

sra_pipeline!49 · created Feb 06, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability
Bug fixes
- Closed
updated Feb 06, 2020
Update test_fastqc.py

sra_pipeline!10 · created May 23, 2019 by Jonathan Gesell
- Closed
updated May 23, 2019
Vizapp

cellranger_mkfastq!51 · created Aug 27, 2019 by Jeremy Mathews
- Closed
updated Aug 27, 2019
WIP: Aws

sra_pipeline!41 · created Oct 08, 2019 by Jonathan Gesell AWS Functionality
Updates testing
- Closed
updated Oct 08, 2019
WIP: Resolve "Add fragment size distribution"

atacseq_analysis!23 · created Jun 02, 2020 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Jun 02, 2020
WIP: Resolve "Add in current chip-analysis functionality."

chipseq_analysis!17 · created Jan 11, 2019 by Venkat Malladi 1.0.0 master
enhancement
- Closed
updated Jan 11, 2019
WIP: Resolve "Fix Trim Reads"

atacseq_analysis!6 · created Dec 11, 2019 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Dec 11, 2019