Merge requests · Astrocyte

Resolve "Add MultiQC"

cellranger_count!46 · created Jun 28, 2019 by Gervaise Henry v1.1.0
To Do enhancement
- Closed
updated Jun 28, 2019
5 correct config

sra_pipeline!18 · created Jul 01, 2019 by Jonathan Gesell
Bug fixes
- Closed
updated Jul 01, 2019
5 correct config

sra_pipeline!19 · created Jul 01, 2019 by Jonathan Gesell
- Closed
updated Jul 01, 2019
Patch 1

sra_pipeline!21 · created Jul 03, 2019 by Jonathan Gesell 5_correctConfig
- Closed
updated Jul 03, 2019
5 correct config

sra_pipeline!22 · created Jul 03, 2019 by Jonathan Gesell
Bug fixes
- Closed
updated Jul 05, 2019
Update gitignore with nextflow and update software reference test

chipseq_analysis!51 · created Jul 10, 2019 by Jeremy Mathews 1.0.6 master
enhancement
- Closed
updated Jul 10, 2019
Resolve "Add pytest to CI"

cellranger_count!49 · created Jul 22, 2019 by Jeremy Mathews v1.1.0
To Do documentation
- Closed
updated Jul 23, 2019
Resolve "Add pytest to CI"

cellranger_count!50 · created Jul 23, 2019 by Gervaise Henry v1.1.0
To Do documentation
- Closed
updated Jul 23, 2019
Revert to origional vizapp

cellranger_mkfastq!49 · created Aug 27, 2019 by Gervaise Henry
- Closed
updated Aug 27, 2019
Vizapp

cellranger_mkfastq!51 · created Aug 27, 2019 by Jeremy Mathews
- Closed
updated Aug 27, 2019
Remove spaces from design file

cellranger_mkfastq!52 · created Aug 29, 2019 by Jeremy Mathews v2.1.5
bug confirmed
- Closed
updated Aug 29, 2019
WIP: Resolve "Testing fails on new update"

chipseq_analysis!59 · created Sep 16, 2019 by Venkat Malladi 1.1.1 master
bug
- Closed
updated Sep 16, 2019
Resolve "Update to bicfbase:1.1"

sra_pipeline!38 · created Oct 01, 2019 by Jonathan Gesell
Updates
- Closed
updated Oct 01, 2019
Updated to most recent images

sra_pipeline!39 · created Oct 01, 2019 by Jonathan Gesell
Updates
- Closed
updated Oct 01, 2019
WIP: Aws

sra_pipeline!41 · created Oct 08, 2019 by Jonathan Gesell AWS Functionality
Updates testing
- Closed
updated Oct 08, 2019
Remove publish dirs for intermediate processes

cellranger_mkfastq!55 · created Nov 07, 2019 by Gervaise Henry v2.1.5
enhancement
- Closed
updated Nov 07, 2019
WIP: Resolve "Remove unnecessary columns from design file"

atacseq_analysis!1 · created Dec 04, 2019 by Holly Ruess Version 2.0 master
- Closed
updated Dec 04, 2019
WIP: Resolve "Fix Trim Reads"

atacseq_analysis!4 · created Dec 11, 2019 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Dec 11, 2019
WIP: Resolve "Fix Trim Reads"

atacseq_analysis!5 · created Dec 11, 2019 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Dec 11, 2019
WIP: Resolve "Fix Trim Reads"

atacseq_analysis!6 · created Dec 11, 2019 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Dec 11, 2019