Merge requests · Astrocyte

Fix cellranger version variable type

cellranger_count!6 · created Mar 04, 2019 by Gervaise Henry 9-cellranger_ref3.0.0
updated Mar 04, 2019
Resolve "Add cellranger 3.0.2 as option"

cellranger_count!5 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 04, 2019
Resolve "Add cellranger 3.0.2 as option"

cellranger_count!4 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 04, 2019
Resolve "Add cellranger v3.0.1"

cellranger_count!3 · created Feb 07, 2019 by Gervaise Henry
updated Feb 07, 2019
Resolve "Add cellranger v3.0.1"

cellranger_count!2 · created Feb 07, 2019 by Gervaise Henry
updated Feb 07, 2019
Merge hotfix into branch

cellranger_count!1 · created Feb 07, 2019 by Gervaise Henry 1-cellranger3.0.1
updated Feb 07, 2019
27 pdfs plots

chipseq_analysis!19 · created Jan 31, 2019 by Venkat Malladi master
updated Jan 31, 2019
Patch 1

tcga_shiny!1 · created Jan 25, 2019 by Spencer Barnes master
- Merged
updated Jan 28, 2019
Resolve "Add in current chip-analysis functionality."

chipseq_analysis!18 · created Jan 11, 2019 by Venkat Malladi 1.0.0 master
enhancement
updated Jan 11, 2019
Add option for outdir.

chipseq_analysis!16 · created Jan 06, 2019 by Venkat Malladi master
- Merged
- 1
updated Jan 06, 2019
25 pairedend qc

chipseq_analysis!15 · created Jan 05, 2019 by Venkat Malladi master
- Merged
- 1
updated Jan 06, 2019
Shiny update

rnaseq!1 · created May 09, 2018 by Danni Luo
- Merged
- 2
updated Nov 19, 2018
updated all processes to use samtools/1.6

chipseq_analysis!14 · created Aug 02, 2018 by Jonathan Gesell master
- Merged
updated Aug 02, 2018
Corrected issue where a gene with 0 read counts could crash the dea.R scripts.

rnaseq!3 · created Jun 27, 2018 by Jonathan Gesell
updated Jun 27, 2018
Resolve "Add in Macs2 support"

chipseq_analysis!13 · created Nov 20, 2017 by Venkat Malladi master
updated Nov 20, 2017
Resolve "Pool and Pseudoreplication"

chipseq_analysis!12 · created Oct 30, 2017 by Venkat Malladi master
updated Oct 30, 2017
Resolve "Include Phantompeakqualtools step"

chipseq_analysis!11 · created Oct 24, 2017 by Venkat Malladi master
updated Oct 24, 2017
Resolve "Make tagAlign files"

chipseq_analysis!10 · created Oct 23, 2017 by Venkat Malladi master
updated Oct 23, 2017
Remove fastqc step.

chipseq_analysis!9 · created Oct 18, 2017 by Venkat Malladi master
updated Oct 18, 2017
Resolve "Update deeptools"

chipseq_analysis!8 · created Oct 18, 2017 by Venkat Malladi 1.0.0 master
updated Oct 18, 2017