Merge requests · Astrocyte

Resolve "Missing modules"

chipseq_analysis!32 · created Apr 23, 2019 by Venkat Malladi 1.0.0 master
bug
- Merged
updated Apr 23, 2019
Resolve "Move module load into nextflow process"

cellranger_count!43 · created May 24, 2019 by Jeremy Mathews v1.1.0
enhancement
updated May 24, 2019
Resolve "Move software version report to the bottom"

cellranger_mkfastq!13 · created Apr 12, 2019 by Gervaise Henry Astrocyte Production (v1.0.0)
updated Apr 12, 2019
Resolve "Move untarBCL code into a bash script"

cellranger_mkfastq!34 · created May 24, 2019 by Jeremy Mathews v1.2.0
To Do enhancement
- Closed
updated May 24, 2019
Resolve "Move untarBCL code into a bash script w/ file folder check"

cellranger_mkfastq!35 · created May 24, 2019 by Jeremy Mathews v1.2.0
enhancement
updated May 24, 2019
Resolve "MultiQC error"

cellranger_count!56 · created Aug 13, 2019 by Jeremy Mathews v1.2.0
enhancement
updated Aug 13, 2019
Resolve "Need Zenodo registration"

sra_pipeline!55 · created Apr 06, 2020 by Venkat Malladi
- Merged
- 2
updated Apr 20, 2020
Resolve "New folders for all steps"

chipseq_analysis!22 · created Mar 16, 2019 by Venkat Malladi master
updated Mar 16, 2019
Resolve "Organize output folders"

cellranger_count!40 · created May 03, 2019 by Gervaise Henry v1.1.0
enhancement
updated May 03, 2019
Resolve "Output software versions and methods and references"

chipseq_analysis!23 · created Apr 18, 2019 by Venkat Malladi 1.0.0 master
enhancement
updated Apr 18, 2019
Resolve "Paired-end Diffbind peaks gives different answer" after changing random 2 of 2 checklist items completed

chipseq_analysis!69 · created Apr 17, 2020 by Venkat Malladi 1.1.0 master
Test bug
updated Apr 20, 2020
Resolve "Pool and Pseudoreplication"

chipseq_analysis!12 · created Oct 30, 2017 by Venkat Malladi master
updated Oct 30, 2017
Resolve "Python Version not in Software Version" 3 of 3 checklist items completed

chipseq_analysis!64 · created Feb 12, 2020 by Venkat Malladi 1.1.1 master
bug
updated Mar 02, 2020
Resolve "redirect_output"

cellranger_mkfastq!4 · created Mar 29, 2019 by Jonathan Gesell master
- Closed
updated Apr 05, 2019
Resolve "Remove Redundant Files"

sra_pipeline!6 · created May 15, 2019 by Jonathan Gesell
error correction
updated May 15, 2019
Resolve "Remove reference genome full folder"

cellranger_count!9 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 04, 2019
Resolve "Remove reference genome full folder"

cellranger_count!8 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 04, 2019
Resolve "Remove unnecessary columns from design file"

atacseq_analysis!2 · created Dec 04, 2019 by Holly Ruess Version 2.0 master
- Merged
- 3
updated Dec 04, 2019
Resolve "Rename Plot profile to be consistent with naming" 4 of 4 checklist items completed

chipseq_analysis!67 · created Mar 21, 2020 by Venkat Malladi 1.1.0
Test
- Merged
- 2
updated Apr 21, 2020
Resolve "Single control or experiment fails at call peaks macs" 4 of 4 checklist items completed

chipseq_analysis!54 · created Jul 12, 2019 by Jeremy Mathews 1.0.6 master
enhancement
- Merged
- 2
updated Jul 30, 2019