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BICF
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BICF
Merge requests

Open 3
Merged 343
Closed 50
All 396

Priority Created date Updated date Milestone due date Popularity Label priority Title

Resolve "Make param.genomeLocation have full path"

BICF/Astrocyte/cellranger_count!13 · created Mar 10, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
- CLOSED
- 0
updated Mar 10, 2019
Updated Zenodo id 0 of 7 tasks completed

BICF/Astrocyte/cellranger_count!77 · created Aug 15, 2020 by Venkat Malladi 2.2.0 To Do
- CLOSED
- 3
updated Aug 15, 2020
WIP: Resolve "Add fragment size distribution"

BICF/Astrocyte/atacseq_analysis!23 · created Jun 02, 2020 by Holly Ruess Version 2.0 master enhancment
- CLOSED
- 0
updated Jun 02, 2020
Resolve "TSS enrichment score" 0 of 6 tasks completed

BICF/Astrocyte/atacseq_analysis!21 · created May 28, 2020 by Holly Ruess Version 2.0 master enhancment
- CLOSED
- 0
updated May 28, 2020
Resolve "Add FRiP score" 0 of 6 tasks completed

BICF/Astrocyte/atacseq_analysis!19 · created May 13, 2020 by Holly Ruess Version 2.0 master enhancment
- CLOSED
- 1
updated May 13, 2020
Update main.nf to replace 'singularity exec' with 'singularity run' to avoid...

BICF/Astrocyte/sra_pipeline!49 · created Feb 06, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability Bug fixes
- CLOSED
- 0
updated Feb 06, 2020
Develop

BICF/Astrocyte/cellranger_mkfastq!58 · created Jan 06, 2020 by Gervaise Henry v2.1.5 master
- CLOSED
- 0
updated Jan 06, 2020
WIP: Resolve "Fix Trim Reads"

BICF/Astrocyte/atacseq_analysis!6 · created Dec 11, 2019 by Holly Ruess Version 2.0 master enhancment
- CLOSED
- 0
updated Dec 11, 2019
WIP: Resolve "Fix Trim Reads"

BICF/Astrocyte/atacseq_analysis!5 · created Dec 11, 2019 by Holly Ruess Version 2.0 master enhancment
- CLOSED
- 0
updated Dec 11, 2019
WIP: Resolve "Fix Trim Reads"

BICF/Astrocyte/atacseq_analysis!4 · created Dec 11, 2019 by Holly Ruess Version 2.0 master enhancment
- CLOSED
- 0
updated Dec 11, 2019
WIP: Resolve "Remove unnecessary columns from design file"

BICF/Astrocyte/atacseq_analysis!1 · created Dec 04, 2019 by Holly Ruess Version 2.0 master
- CLOSED
- 0
updated Dec 04, 2019
Remove publish dirs for intermediate processes

BICF/Astrocyte/cellranger_mkfastq!55 · created Nov 07, 2019 by Gervaise Henry v2.1.5 enhancement
- CLOSED
- 0
updated Nov 07, 2019
WIP: Aws

BICF/Astrocyte/sra_pipeline!41 · created Oct 08, 2019 by Jonathan Gesell AWS Functionality Updates testing
- CLOSED
- 0
updated Oct 08, 2019
WIP: Resolve "Testing fails on new update"

BICF/Astrocyte/chipseq_analysis!59 · created Sep 16, 2019 by Venkat Malladi 1.1.1 master bug
- CLOSED
- 0
updated Sep 16, 2019
Remove spaces from design file

BICF/Astrocyte/cellranger_mkfastq!52 · created Aug 29, 2019 by Jeremy Mathews v2.1.5 bug confirmed
- CLOSED
- 0
updated Aug 29, 2019
Resolve "Add pytest to CI"

BICF/Astrocyte/cellranger_count!50 · created Jul 23, 2019 by Gervaise Henry v1.1.0 To Do documentation
- CLOSED
- 0
updated Jul 23, 2019
Resolve "Add pytest to CI"

BICF/Astrocyte/cellranger_count!49 · created Jul 22, 2019 by Jeremy Mathews v1.1.0 To Do documentation
- CLOSED
- 0
updated Jul 23, 2019
Update gitignore with nextflow and update software reference test

BICF/Astrocyte/chipseq_analysis!51 · created Jul 10, 2019 by Jeremy Mathews 1.0.6 master enhancement
- CLOSED
- 0
updated Jul 10, 2019
Resolve "Add MultiQC"

BICF/Astrocyte/cellranger_count!46 · created Jun 28, 2019 by Gervaise Henry v1.1.0 To Do enhancement
- CLOSED
- 0
updated Jun 28, 2019
Add MultiQC to output. Add version and reference material. fix README

BICF/Astrocyte/cellranger_count!44 · created Jun 27, 2019 by Jeremy Mathews v1.1.0 To Do enhancement
- CLOSED
- 0
updated Jun 28, 2019

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