Merge requests · BICF

Fix #34 to remove trailing and leading whitespace in design file contents

BICF/Astrocyte/cellranger_mkfastq!54 · created Nov 07, 2019 by Jeremy Mathews v2.1.5
bug enhancement
updated Nov 07, 2019
Revert patients to unknown.

BICF/KCE/kce_etl!6 · created Oct 28, 2019 by Venkat Malladi
- Merged
updated Oct 28, 2019
Fix date output.

BICF/KCE/kce_etl!5 · created Oct 25, 2019 by Venkat Malladi
- Merged
updated Oct 26, 2019
Fix output.

BICF/KCE/kce_etl!4 · created Oct 24, 2019 by Venkat Malladi
- Merged
updated Oct 24, 2019
Transform germline gene tables.

BICF/KCE/kce_etl!3 · created Oct 24, 2019 by Venkat Malladi
updated Oct 24, 2019
Aws test

BICF/Astrocyte/sra_pipeline!42 · created Oct 08, 2019 by Jonathan Gesell AWS Functionality
Updates testing
updated Oct 09, 2019
Deleted workflow/output/.gitkeep, workflow/main-aws.nf files

BICF/Astrocyte/sra_pipeline!43 · created Oct 08, 2019 by Jonathan Gesell
Updates testing
updated Oct 09, 2019
Updated to bicfbase:1.3

BICF/Astrocyte/sra_pipeline!40 · created Oct 01, 2019 by Jonathan Gesell
Updates
updated Oct 01, 2019
Add Mingjie.

onboarding!14 · created Sep 26, 2019 by Venkat Malladi
- Merged
updated Sep 26, 2019
Add in vitals conversion.

BICF/KCE/kce_etl!1 · created Sep 25, 2019 by Venkat Malladi
updated Sep 25, 2019
Update paired-end diff to skip this test. 3 of 3 checklist items completed

BICF/Astrocyte/chipseq_analysis!60 · created Sep 16, 2019 by Venkat Malladi 1.1.1 master
bug
updated Sep 17, 2019
Resolve "xcor.py, --random-source fails if file is too small" 3 of 3 checklist items completed

BICF/Astrocyte/chipseq_analysis!58 · created Aug 27, 2019 by Jeremy Mathews 1.1.1 master
- Merged
- 6
updated Sep 12, 2019
Updated checkDesignFile for Astrocyte functionality.

BICF/Astrocyte/sra_pipeline!37 · created Sep 11, 2019 by Jonathan Gesell Astrocyte Functionality
Bug fixes
updated Sep 11, 2019
Resolve "Update to bicfbase:1.1"

BICF/Astrocyte/sra_pipeline!36 · created Sep 10, 2019 by Jonathan Gesell Astrocyte Functionality
Updates error correction
updated Sep 10, 2019
Resolve "Design file - filename with spaces error"

BICF/Astrocyte/cellranger_mkfastq!53 · created Aug 29, 2019 by Jeremy Mathews v2.1.5
bug confirmed
updated Sep 03, 2019
add in error strategy

BICF/Astrocyte/rnaseq!8 · created Aug 27, 2019 by Jeremy Mathews
updated Aug 28, 2019
Corrected check design to output an explanation per error.

BICF/Astrocyte/sra_pipeline!35 · created Aug 28, 2019 by Jonathan Gesell Astrocyte Functionality
Bug fixes
updated Aug 28, 2019
Vizapp

BICF/Astrocyte/cellranger_mkfastq!50 · created Aug 27, 2019 by Gervaise Henry
updated Aug 27, 2019
Split app.R into server and UI

BICF/Astrocyte/cellranger_mkfastq!48 · created Aug 27, 2019 by Jeremy Mathews
updated Aug 27, 2019
Add Vizapp of multiqc results

BICF/Astrocyte/cellranger_mkfastq!47 · created Aug 27, 2019 by Jeremy Mathews
updated Aug 27, 2019