Merge requests · BICF

Trenco devel

BICF/Software/trenco!1 · created May 11, 2021 by Christopher Bennett
- Merged
- Approved
updated May 11, 2021
Singularity

BICF/Astrocyte/rnaseq!10 · created May 20, 2021 by Brandi Cantarel
- Merged
updated May 20, 2021
Fix bugs in published version 2.0.0

BICF/Astrocyte/rnaseq!11 · created Mar 22, 2022 by Peng Lian
- Merged
updated Mar 22, 2022
Added new Docker file for motif search (named meme-5.5.4) installed from...

BICF/Astrocyte/chipseq_analysis!76 · created Oct 16, 2024 by Thamer Alsulaiman master
updated Feb 28, 2025
Containerized version with meme-chip 5.5.4

BICF/Astrocyte/chipseq_analysis!75 · created Sep 05, 2024 by Thamer Alsulaiman
updated Feb 28, 2025
Draft: Resolve "Update nf-tower token"

BICF/Astrocyte/chipseq_analysis!74 · created Jul 25, 2021 by Venkat Malladi 2.0.0
critical
updated Jul 28, 2021
WIP: Astrocyte 0.4.0 0 of 7 checklist items completed

BICF/Astrocyte/cellranger_mkfastq!71 · created Sep 07, 2020 by Venkat Malladi
updated Jun 22, 2021
Resolve "File vs Channel"

BICF/Astrocyte/sra_pipeline!63 · created Aug 27, 2020 by Jonathan Gesell
- 3
updated Nov 30, 2020
Updated Zenodo id 0 of 7 checklist items completed

BICF/Astrocyte/cellranger_count!77 · created Aug 15, 2020 by Venkat Malladi 2.2.0
To Do
- Closed
- 3
updated Aug 15, 2020
Update CHANGELOG.md with new v1.1.0 change information.

BICF/Astrocyte/sra_pipeline!60 · created Jun 17, 2020 by Jonathan Gesell
Updates
- Closed
updated Jun 17, 2020
WIP: Resolve "Add fragment size distribution"

BICF/Astrocyte/atacseq_analysis!23 · created Jun 02, 2020 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Jun 02, 2020
Resolve "TSS enrichment score" 0 of 6 checklist items completed

BICF/Astrocyte/atacseq_analysis!21 · created May 28, 2020 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated May 28, 2020
Resolve "Add FRiP score" 0 of 6 checklist items completed

BICF/Astrocyte/atacseq_analysis!19 · created May 13, 2020 by Holly Ruess Version 2.0 master
enhancment
- Closed
- 1
updated May 13, 2020
Update main.nf to replace 'singularity exec' with 'singularity run' to avoid...

BICF/Astrocyte/sra_pipeline!49 · created Feb 06, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability
Bug fixes
- Closed
updated Feb 06, 2020
Develop

BICF/Astrocyte/cellranger_mkfastq!58 · created Jan 06, 2020 by Gervaise Henry v2.1.5 master
- Closed
updated Jan 06, 2020
WIP: Resolve "Fix Trim Reads"

BICF/Astrocyte/atacseq_analysis!6 · created Dec 11, 2019 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Dec 11, 2019
WIP: Resolve "Fix Trim Reads"

BICF/Astrocyte/atacseq_analysis!5 · created Dec 11, 2019 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Dec 11, 2019
WIP: Resolve "Fix Trim Reads"

BICF/Astrocyte/atacseq_analysis!4 · created Dec 11, 2019 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Dec 11, 2019
WIP: Resolve "Remove unnecessary columns from design file"

BICF/Astrocyte/atacseq_analysis!1 · created Dec 04, 2019 by Holly Ruess Version 2.0 master
- Closed
updated Dec 04, 2019
Remove publish dirs for intermediate processes

BICF/Astrocyte/cellranger_mkfastq!55 · created Nov 07, 2019 by Gervaise Henry v2.1.5
enhancement
- Closed
updated Nov 07, 2019