Develop (!6) · Merge requests · Strand Lab / sc-TissueMapper_Pr

Merged Develop

develop into master

Merged Gervaise Henry requested to merge develop into master 6 years ago

Dec 17, 2018
- Fix run_Pd for Hillock geneset · 1debf570
  Gervaise Henry authored 6 years ago
  
  1debf570
Dec 14, 2018
- Fix hillock genelist csv and edit the Pd r.script to match · 97e6ecfc
  Gervaise Henry authored 6 years ago
  
  97e6ecfc
Dec 04, 2018
- Revert R version to fixed stable version: 3.4.1-gccmkl · dab5ccad
  Gervaise Henry authored 6 years ago
  
  dab5ccad
Nov 19, 2018
- Update dws sc genesets... again · fee6d690
  Gervaise Henry authored 6 years ago
  
  fee6d690
Nov 18, 2018
- Use all cells for lung liniage QuSAGE · 69739b22
  Gervaise Henry authored 6 years ago
  
  69739b22
Nov 16, 2018
- Update dws sc deg · 816d8fff
  Gervaise Henry authored 6 years ago
  
  816d8fff
- Update README.md · a5df5f38
  Gervaise Henry authored 6 years ago
  
  a5df5f38
Nov 15, 2018
- Update README.md · 6bc9af29
  Gervaise Henry authored 6 years ago
  
  6bc9af29
Nov 10, 2018
- Revert all analysis to use dws bulk pan Epi and St genelists for lin ID with QuSAGE · ca6ba2ef
  Gervaise Henry authored 6 years ago
  
  ca6ba2ef
Nov 06, 2018
- Decrease stringency for pan Epi/St generation in Pd and increase min pop downsample for FACS · 0f6497ca
  Gervaise Henry authored 6 years ago
  
  0f6497ca
Nov 05, 2018
- Update dws.sc pan Epi and St DEGs · 748625ec
  Gervaise Henry authored 6 years ago
  
  748625ec
- Filter pop specific genes from pan Epi and St DEGs · fc1e27a3
  Gervaise Henry authored 6 years ago
  
  fc1e27a3
Nov 04, 2018
- Don't downsample FACS analysis · e42b9eea
  Gervaise Henry authored 6 years ago
  
  e42b9eea
- Revert Epi and St dws.sc genesets and how they are generated · 988b20ad
  Gervaise Henry authored 6 years ago
  
  988b20ad
Nov 03, 2018
- Update dws.sc genes · dd3d77bc
  Gervaise Henry authored 6 years ago
  
  dd3d77bc
- Merge branch 'StressCompare' into 'develop' · ead1c737
  Gervaise Henry authored 6 years ago
```
Stress compare

See merge request sc-TissueMapper_Pr!5
```
  ead1c737
- Fix output folders for StressCompare and add to Pd.sh · 696ac6fb
  Gervaise Henry authored 6 years ago
  
  696ac6fb
- Merge devleop into StressCompare · 68efa3e4
  Gervaise Henry authored 6 years ago
  
  68efa3e4
- Increase stringency for pan Epi and St DEG calc to 75% of pops and 2FC · c0718701
  Gervaise Henry authored 6 years ago
  
  c0718701
- Update README.md · c3a845d3
  Gervaise Henry authored 6 years ago
  
  c3a845d3
- Update readme.md · 1bd6628c
  Gervaise Henry authored 6 years ago
  
  1bd6628c
Nov 02, 2018
- Make DEG try · 31988046
  Gervaise Henry authored 6 years ago
  
  31988046
- Fix DEG on DS.D17 · e1789e83
  Gervaise Henry authored 6 years ago
  
  e1789e83
- Don't do cell cycle analysis for DS.D17 · ef38fbfd
  Gervaise Henry authored 6 years ago
  
  ef38fbfd
- Revert to high RAM nodes and new R/3.4.1 · 6dad81ef
  Gervaise Henry authored 6 years ago
  
  6dad81ef
- Revert to stable old R/3.4.1 · 71d62d0f
  Gervaise Henry authored 6 years ago
  
  71d62d0f
- Allow DS bash scripts to use any node · 4d30cda6
  Gervaise Henry authored 6 years ago
  
  4d30cda6
- Use rebuilt R/3.4.1 · ed753d6e
  Gervaise Henry authored 6 years ago
  
  ed753d6e
- Update bash scripts, link data and use new R/3.4.1 · 5cb8b844
  Gervaise Henry authored 6 years ago
  
  5cb8b844
- Fix LE DEG generation for Pd analysis · 5af3d377
  Gervaise Henry authored 6 years ago
  
  5af3d377
- Fix LE comparison for DEG for DS.D17 · 3861d456
  Gervaise Henry authored 6 years ago
  
  3861d456
- Add DEG generation to ds.D17 · 75c4e6ce
  Gervaise Henry authored 6 years ago
  
  75c4e6ce
Oct 17, 2018
- Add % var to PC plots · 1399756b
  Gervaise Henry authored 6 years ago
  
  1399756b
- Finalize? stress comparisson (van den Brink) code · a684c35f
  Gervaise Henry authored 6 years ago
  
  a684c35f
Oct 16, 2018
- Merge remote-tracking branch 'origin/develop' into StressCompare · 52315a1a
  Gervaise Henry authored 6 years ago
  
  52315a1a
Aug 21, 2018
- Add more to stress compare · 7807220c
  Gervaise Henry authored 6 years ago
  
  7807220c
Aug 20, 2018
- Start stress compare · 0188ef5d
  Gervaise Henry authored 6 years ago
  
  0188ef5d

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