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Gervaise Henry authored112f3c32
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sc_LinkData-CI.TestData.Create.sh 852 B
#!/bin/bash
mkdir ../analysis
mkdir ../analysis/DATA
ln -s /work/urology/ghenry/RNA-Seq/SingleCell/PIPELINE/DATA/"$1"/10x/filtered_gene_bc_matrices_mex/GRCh38/* ../analysis/DATA/
ln -s /work/urology/ghenry/RNA-Seq/SingleCell/PIPELINE/DATA/ANALYSIS/"$1"/sc10x.Pr.ALL.cluster.NOStress.IDepi+st+ne.Merge.Rda ../analysis/DATA/sc10x.data.Rda
mkdir ../analysis/CI.TestData.downsample
mkdir ../analysis/CI.TestData.downsample/10x
mkdir ../analysis/CI.TestData.downsample/10x/filtered_gene_bc_matrices_mex
mkdir ../analysis/CI.TestData.downsample/10x/filtered_gene_bc_matrices_mex/GRCh38
cp /work/urology/ghenry/RNA-Seq/SingleCell/PIPELINE/DATA/"$1"/"$1"-demultiplex.csv ../analysis/CI.TestData.downsample/"$1"-demultiplex.csv
cp /work/urology/ghenry/RNA-Seq/SingleCell/PIPELINE/DATA/"$1"/10x/"$1"-aggr.csv ../analysis/CI.TestData.downsample/10x/"$1"-aggr.csv