workflow/tests/plot_profile.bats

+#!/opt/bats/libexec/bats-core/ bats
+
+profile_script="./workflow/scripts/plot_profile.sh"
+
+@test "Test deeptools present" {
+  source ${profile_script}
+  run check_tools
+}
+
+@test "Test deeptools computeMatrix" {
+  source ${profile_script}
+  run compute_matrix test_data/ENCSR238SGC_pooled.fc_signal.bw /project/shared/bicf_workflow_ref/mouse/GRCm38/gencode.vM20.annotation.gtf
+  FILE=computeMatrix.gz
+  if [[ -s "$FILE" ]]; then
+      echo "$FILE exists and not empty"
+  fi
+}
+
+@test "Test deeptools plotProfile" {
+  source ${profile_script}
+  run plot_profile computeMatrix.gz
+  FILE=plotProfile.png
+  if [[ -s "$FILE" ]]; then
+      echo "$FILE exists and not empty"
+  fi
+}