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cellranger_mkfastq
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Resolve "Add pytest to CI"
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Resolve "Add pytest to CI"
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Jeremy Mathews
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25-AddPytestCI
into
develop
5 years ago
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#25 (closed)
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workflow/tests/test_fastqc.py
+
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@@ -6,10 +6,8 @@ from io import StringIO
import
os
test_output_path
=
os
.
path
.
dirname
(
os
.
path
.
abspath
(
__file__
))
+
\
'
/../output/misc/fastqc/
**/**
/
'
'
/../output/misc/fastqc/
run/cellranger-tiny-bcl-1_2_0
/
'
@pytest.mark.fastqc
def
test_fastqc
():
fastqcs
=
glob
.
glob
(
'
/../output/misc/fastqc/*/*/*fastqc.zip
'
,
recursive
=
True
)
for
f
in
fastqcs
:
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
f
))
assert
os
.
path
.
exists
(
test_output_path
)