Buzz lightyear

Add Spaceranger to the mkfastq pipeline

workflow/tests/test_mkfastq.py

@@ -14,15 +14,15 @@ import os
 test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
 		'/../output/'
 
-@pytest.mark.simple1
-def test_simple1_mkfastq():
+@pytest.mark.cellranger1bcl
+def test_cellranger1bcl_mkfastq():
     assert os.path.exists(os.path.join(test_output_path, 'mkfastq', 'cellranger-tiny-bcl-1_2_0', 'outs'))
 
-@pytest.mark.simple2
-def test_simple2_mkfastq():
+@pytest.mark.cellranger2bcl
+def test_cellranger2bcl_mkfastq():
     assert os.path.exists(os.path.join(test_output_path, 'mkfastq', 'cellranger-tiny-bcl-1_2_0-1', 'outs'))
     assert os.path.exists(os.path.join(test_output_path, 'mkfastq', 'cellranger-tiny-bcl-1_2_0-2', 'outs'))
 
-@pytest.mark.simple3
-def test_simple3_mkfastq():
+@pytest.mark.spaceranger1bcl
+def test_spaceranger1bcl_mkfastq():
     assert os.path.exists(os.path.join(test_output_path, 'spaceranger_mkfastq', 'mkfastq_spaceranger-tiny-bcl-1', 'outs'))