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De containerize

Gervaise Henry requested to merge de-containerize into develop

De-containerize the pipeline to allow for versioning on Astrocyte

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • Documentation in docs is updated
  • CHANGELOG.md is updated
  • README.md is updated
  • LICENSE.md is updated with new contributors
  • nextflow.config pipeline version updated
  • Close issue
    Closes #

/cc @ghenry @venkat.malladi

Edited by Gervaise Henry

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