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Gervaise Henry authoreda1d75b8a
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v2.0.0
User Facing
- Check Design File for spaces in name and file contents
- Attempt to preven thredding error (which appears to only happen on 256GBv1 nodes)
- Add option for 5' GEX chemistry
- Remove cellranger 3.0.1 as an option
- Add cellranger 2.2.0 as an option
Background
- Add Nextflow Tower integration into CI (GHH's profile)
- Add new layered config folders, including prepare for awsifying
- Update param to new standard
- Use docker containers
- Update CI
Known Bugs
- Vizapp does not yet work for Astrocyte
- Running in CLI: to set --fastq path of file/s needs to be in quotes
v1.2.0
User Facing
- Add Cellranger Version 3.1.0
- Add human/mouse farmyard reference Version 3.1.0 from 10x
- Add Vizapp (shiny)
- Fix mutiqc error
- Add MIT License
Background
- Add CI Artifacts
Known Bugs
- Vizapp does not yet work for Astrocyte
v1.1.0
User Facing
- Make report (multiqc) for cellranger qc output, version, references
Background
- Add changelog
- Add check for space in genomeLocationFull (cellranger cannot handle) in bash script
- Move module loads to process setup level code
- Add Jeremy Mathews to author list
- Apply style guide
- Add pytests for ouptuts
- Test for incompatible params (kitVersion=3 AND version=2.1.1)
Known Bugs