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CHANGELOG.md 1.51 KiB

v2.2.0-indev

User Facing

  • Add cellranger version 4.0.0
  • Add references version 2020-A (GRCh38, mm10, mix)

Background

Known Bugs

  • Vizapp does not yet work for Astrocyte
  • Running in CLI: to set --fastq path of file/s needs to be in quotes

v2.1.1

User Facing

  • Check Design File for spaces in name and file contents
  • Attempt to prevent thredding error (which appears to only happen on 256GBv1 nodes)
  • Add option for 5' GEX chemistry
  • Remove cellranger 3.0.1 as an option
  • Fix CLI MultiQC failure bug

Background

  • Add Nextflow Tower integration into CI (GHH's profile)
  • Add new layered config folders, including prepare for awsifying
  • Update param to new standard
  • Update CI
  • Add pipeline tracking tool

Known Bugs

  • Vizapp does not yet work for Astrocyte
  • Running in CLI: to set --fastq path of file/s needs to be in quotes

v1.2.0

User Facing

  • Add Cellranger Version 3.1.0
  • Add human/mouse farmyard reference Version 3.1.0 from 10x
  • Add Vizapp (shiny)
  • Fix mutiqc error
  • Add MIT License

Background

  • Add CI Artifacts

Known Bugs

  • Vizapp does not yet work for Astrocyte