references.md

References

1. Nextflow:

• Di Tommaso, P., Chatzou, M., Floden, E. W., Barja, P. P., Palumbo, E., & Notredame, C. (2017). Nextflow enables reproducible computational workflows. Nature biotechnology, 35(4), 316-319. doi:10.1038/nbt.3820

2. cellranger

• Cellranger count https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/count

3. python:

• Anaconda (Anaconda Software Distribution, https://anaconda.com)

4. Seurat:

• Stuart, T., Butler, A., Hoffman, P., Hafemeister, C., Papalexi, E., Mauck III, W. M., ... & Satija, R. (2019). Comprehensive integration of single-cell data. Cell, 177(7), 1888-1902. doi:10.1016/j.cell.2019.05.031

5. MultiQc:

• Ewels P., Magnusson M., Lundin S. and Käller M. 2016. MultiQC: Summarize analysis results for multiple tools and samples in a single report. Bioinformatics 32(19): 3047–3048. doi:10.1093/bioinformatics/btw354