V2.0.3

Fixed

• Removed biosample, factor, treatment from design file
• Updated documentation
• Output graphics are in pdf format
• Not optional to remove chrM while converting to tagAlign
• Not optional to do a tn5 shift on tagAlign files

Added

• Changelog
• Merge request template
• Added new CI/CD tests for better coverage
• Added punctuation check in design file
• Added sequence (fastq1) length into design file for better mapping
• Raw fastq1 sequence length determines mapper
• Added paired-end peak calling
• multiQC report
• Added percentage of reads in mitochondria (unfiltered and dedup)
• Added FRiP score (per sample: reads in replicated peaks/total reads per)
• Added TSS enrichment
• Added Fragment/Insert Length size
• Removal of blacklist regions
• Annotate peaks after removing non-chromosomes