V2.0.3
Fixed
- Removed biosample, factor, treatment from design file
- Updated documentation
- Output graphics are in pdf format
- Not optional to remove chrM while converting to tagAlign
- Not optional to do a tn5 shift on tagAlign files
Added
- Changelog
- Merge request template
- Added new CI/CD tests for better coverage
- Added punctuation check in design file
- Added sequence (fastq1) length into design file for better mapping
- Raw fastq1 sequence length determines mapper
- Added paired-end peak calling
- multiQC report
- Added percentage of reads in mitochondria (unfiltered and dedup)
- Added FRiP score (per sample: reads in replicated peaks/total reads per)
- Added TSS enrichment
- Added Fragment/Insert Length size
- Removal of blacklist regions
- Annotate peaks after removing non-chromosomes