Commit 6d165516 authored by Yin Xi's avatar Yin Xi
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Update README.md

parent e492b1c2
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1. reading and storing ROIs
there are currently two ways of drawing ROIs that can be used for radiomics, 1. save ROIs into DICOM header via pyOsirix plug-in; 2. MINT (limited access). Two separate python routines were developed to deal with each of this situation. the end products are the same, a folder for the image (.NRRD) and a folder for masks (.NRRD) and a csv list of paths of each mask and corresponding image.
For extracting ROI from DICOM header, both classic and enhanced DICOM formats were considered. This code is well tested for classic DICOM but not extensively tested for enhanced DICOM.
For extracting ROI from DICOM header, both classic and enhanced DICOM formats were considered. This code is well tested for classic DICOM but not extensively tested for enhanced DICOM. For DWI where multiple b values are in the same series, ROIs will be orders the same as the image.
2. radiomics extraction
this is just a wrapper for feature extraction via pyRdiomics. A parameter file may be needed.
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