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Venkat Malladi
TFSEE
Repository
"conf/aws.config" did not exist on "eb83dee42ba123f4cd75820d92735d0f1e017dfe"
First pass at analysis of GRO-seq centered enhancers.
Venkat Malladi
authored
8 years ago
0a630fb7
0a630fb76dd0cce867b30a4259b5e39cbd4de7f7
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analysis_output
tfsee
GRO_seq_TFSEE
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GRO-seq_enhancers.bed
GRO_filtered_peaks.tsv
H3K27ac_filtered_peaks.bed
H3K27ac_filtered_peaks.tsv
H3K4me1_filtered_peaks.bed
H3K4me1_filtered_peaks.tsv
Input_filtered_peaks.bed
Input_filtered_peaks.tsv
SSP_filtered_peaks_sum.tsv
SUNP_filtered_peaks.tsv
box_plot_cluster_1.png
box_plot_cluster_2.png
box_plot_cluster_3.png
box_plot_cluster_4.png
final_full_cluster_heatmap.csv
final_full_cluster_heatmap.png
final_full_cluster_heatmap_gro-seq.csv
final_full_cluster_heatmap_gro-seq.png
final_full_cluster_heatmap_gro_rna.csv
final_full_cluster_heatmap_gro_rna.png
final_full_cluster_heatmap_rna-seq.csv
final_full_cluster_heatmap_rna-seq.png
final_full_cluster_z_score-groseq.csv
final_full_cluster_z_score-rnaseq.csv
final_full_cluster_z_score.csv
final_full_cluster_z_score_gro_rna.csv
find_the_clusters.py
gencode.v19.annotation_protein_coding_ids.txt
h3k27ac_list.csv
h3k4me1_list.csv
input_list.csv
k_means_clustering.png
k_means_clustering_pca.png
matrix_analysis.py
mem_awk_script.sh
rna.tsv
rpkm.py
tfsee_processing.sh
