From ecec90765195de161c11075df3a59847c44ed1b1 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <Venkat.Malladi@utsouthwestern.edu>
Date: Thu, 23 Feb 2017 09:58:26 -0600
Subject: [PATCH] fix plots.
---
ES_D0_Histone_enhancers.bed | 61550 ++++++++++++++--------------
ES_D10_Histone_enhancers.bed | 67084 +++++++++++++++---------------
ES_D2_Histone_enhancers.bed | 55200 ++++++++++++-------------
ES_D5_Histone_enhancers.bed | 56058 ++++++++++++-------------
ES_D7_Histone_enhancers.bed | 72466 ++++++++++++++++-----------------
histone_enhancer_plots.py | 10 +-
6 files changed, 156184 insertions(+), 156184 deletions(-)
diff --git a/ES_D0_Histone_enhancers.bed b/ES_D0_Histone_enhancers.bed
index 07517c1..e2727f1 100644
--- a/ES_D0_Histone_enhancers.bed
+++ b/ES_D0_Histone_enhancers.bed
@@ -1,30775 +1,30775 @@
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diff --git a/ES_D10_Histone_enhancers.bed b/ES_D10_Histone_enhancers.bed
index c99d617..4d2eac9 100644
--- a/ES_D10_Histone_enhancers.bed
+++ b/ES_D10_Histone_enhancers.bed
@@ -1,33542 +1,33542 @@
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diff --git a/ES_D2_Histone_enhancers.bed b/ES_D2_Histone_enhancers.bed
index d2b2ac2..272232e 100644
--- a/ES_D2_Histone_enhancers.bed
+++ b/ES_D2_Histone_enhancers.bed
@@ -1,27600 +1,27600 @@
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diff --git a/ES_D5_Histone_enhancers.bed b/ES_D5_Histone_enhancers.bed
index 6adeac5..49808f3 100644
--- a/ES_D5_Histone_enhancers.bed
+++ b/ES_D5_Histone_enhancers.bed
@@ -1,28029 +1,28029 @@
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+chrX 153289188 153289439 HE_218388
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+chrX 153538868 153539637 HE_218409
+chrX 153762585 153763048 HE_218415
+chrX 154226413 154227336 HE_218430
+chrX 154866962 154867352 HE_218436
+chrY 6625884 6627155 HE_218466
+chrY 6650634 6651205 HE_218469
+chrY 6714600 6714910 HE_218472
+chrY 18039969 18040182 HE_218674
+chrY 21395101 21395295 HE_218718
+chrY 21466381 21466871 HE_218720
diff --git a/ES_D7_Histone_enhancers.bed b/ES_D7_Histone_enhancers.bed
index 27b897b..42cc7a6 100644
--- a/ES_D7_Histone_enhancers.bed
+++ b/ES_D7_Histone_enhancers.bed
@@ -1,36233 +1,36233 @@
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diff --git a/histone_enhancer_plots.py b/histone_enhancer_plots.py
index b18b973..95c227d 100644
--- a/histone_enhancer_plots.py
+++ b/histone_enhancer_plots.py
@@ -48,11 +48,11 @@ es_d5_enhancers = potential_enhancers[(potential_enhancers['ES_D5_H3K4me1'] >=1
es_d7_enhancers = potential_enhancers[(potential_enhancers['ES_D7_H3K4me1'] >=1) & (potential_enhancers['ES_D7_H3K27ac'] >= 1)]
es_d10_enhancers = potential_enhancers[(potential_enhancers['ES_D10_H3K4me1'] >=1) & (potential_enhancers['ES_D10_H3K27ac'] >= 1)]
-es_d0_enhancers.to_csv("ES_D0_Histone_enhancers.bed", index_label="gene_id",sep='\t', columns=["chr", "star", "end","name"],header=False,index=False)
-es_d2_enhancers.to_csv("ES_D2_Histone_enhancers.bed", index_label="gene_id",sep='\t', columns=["chr", "star", "end","name"],header=False,index=False)
-es_d5_enhancers.to_csv("ES_D5_Histone_enhancers.bed", index_label="gene_id",sep='\t', columns=["chr", "star", "end","name"],header=False,index=False)
-es_d7_enhancers.to_csv("ES_D7_Histone_enhancers.bed", index_label="gene_id",sep='\t', columns=["chr", "star", "end","name"],header=False,index=False)
-es_d10_enhancers.to_csv("ES_D10_Histone_enhancers.bed", index_label="gene_id",sep='\t', columns=["chr", "star", "end","name"],header=False,index=False)
+es_d0_enhancers.to_csv("ES_D0_Histone_enhancers.bed", index_label="gene_id",sep='\t', columns=["chrom", "start", "end","name"],header=False,index=False)
+es_d2_enhancers.to_csv("ES_D2_Histone_enhancers.bed", index_label="gene_id",sep='\t', columns=["chrom", "start", "end","name"],header=False,index=False)
+es_d5_enhancers.to_csv("ES_D5_Histone_enhancers.bed", index_label="gene_id",sep='\t', columns=["chrom", "start", "end","name"],header=False,index=False)
+es_d7_enhancers.to_csv("ES_D7_Histone_enhancers.bed", index_label="gene_id",sep='\t', columns=["chrom", "start", "end","name"],header=False,index=False)
+es_d10_enhancers.to_csv("ES_D10_Histone_enhancers.bed", index_label="gene_id",sep='\t', columns=["chrom", "start", "end","name"],header=False,index=False)
# Make the Graph
raw_data = {'Cell': ['hES', 'DE', 'GT', 'FG', 'PE'],
--
GitLab