From ab84236748feec85f1d96930ff5599554d7e07ec Mon Sep 17 00:00:00 2001
From: Venkat Malladi <Venkat.Malladi@utsouthwestern.edu>
Date: Fri, 28 Oct 2016 10:59:25 -0500
Subject: [PATCH] Add in names.
---
define_short_transcripts.py | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/define_short_transcripts.py b/define_short_transcripts.py
index 2c56d61..b4e2a48 100755
--- a/define_short_transcripts.py
+++ b/define_short_transcripts.py
@@ -89,8 +89,11 @@ def tss_center(feature,assembly):
stop = chromsizes[feature.chrom][1]
feature.start = start
feature.stop = stop
+ feature.name = feature[3]
+ feature.score = '0'
+ feature.strand = '.'
return pybedtools.create_interval_from_list(
- [feature.chrom, str(feature.start), str(feature.stop)])
+ [feature.chrom, str(feature.start), str(feature.stop), feature.name, feature.score, feature.strand ])
def main():
--
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