Commit 75f33e04 authored by Venkat Malladi's avatar Venkat Malladi
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change to transcripts.

parent 4e1848df
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......@@ -58,12 +58,16 @@ chr1 ENSEMBL exon 15934573 15934640 . - . gene_id "ENSG00000252417.1"; transcrip
chr1 ENSEMBL gene 16840617 16840780 . - . gene_id "ENSG00000206652.1"; transcript_id "ENSG00000206652.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-1"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-1"; level 3;
chr1 ENSEMBL transcript 16840617 16840780 . - . gene_id "ENSG00000206652.1"; transcript_id "ENST00000383925.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-1"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-1-201"; level 3; tag "basic";
chr1 ENSEMBL exon 16840617 16840780 . - . gene_id "ENSG00000206652.1"; transcript_id "ENST00000383925.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-1"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-1-201"; exon_number 1; exon_id "ENSE00001808303.1"; level 3; tag "basic";
chr1 ENSEMBL transcript 16860576 16860719 . - . gene_id "ENSG00000233421.3"; transcript_id "ENST00000516290.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "U1"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "U1.2-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000002488.1";
chr1 ENSEMBL exon 16860576 16860719 . - . gene_id "ENSG00000233421.3"; transcript_id "ENST00000516290.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "U1"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "U1.2-201"; exon_number 1; exon_id "ENSE00002088567.1"; level 3; tag "basic"; havana_gene "OTTHUMG00000002488.1";
chr1 ENSEMBL gene 16993280 16993443 . - . gene_id "ENSG00000207513.1"; transcript_id "ENSG00000207513.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-3"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-3"; level 3;
chr1 ENSEMBL transcript 16993280 16993443 . - . gene_id "ENSG00000207513.1"; transcript_id "ENST00000384782.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-3"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-3-201"; level 3; tag "basic";
chr1 ENSEMBL exon 16993280 16993443 . - . gene_id "ENSG00000207513.1"; transcript_id "ENST00000384782.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-3"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-3-201"; exon_number 1; exon_id "ENSE00001807145.1"; level 3; tag "basic";
chr1 ENSEMBL gene 17067011 17067174 . + . gene_id "ENSG00000207389.1"; transcript_id "ENSG00000207389.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-4"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-4"; level 3;
chr1 ENSEMBL transcript 17067011 17067174 . + . gene_id "ENSG00000207389.1"; transcript_id "ENST00000384659.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-4"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-4-201"; level 3; tag "basic";
chr1 ENSEMBL exon 17067011 17067174 . + . gene_id "ENSG00000207389.1"; transcript_id "ENST00000384659.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-4"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-4-201"; exon_number 1; exon_id "ENSE00001806909.1"; level 3; tag "basic";
chr1 ENSEMBL transcript 17200203 17200346 . + . gene_id "ENSG00000228549.2"; transcript_id "ENST00000362684.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "U1"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "U1.1-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000002203.1";
chr1 ENSEMBL exon 17200203 17200346 . + . gene_id "ENSG00000228549.2"; transcript_id "ENST00000362684.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "U1"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "U1.1-201"; exon_number 1; exon_id "ENSE00001437447.1"; level 3; tag "basic"; havana_gene "OTTHUMG00000002203.1";
chr1 ENSEMBL gene 17222475 17222638 . + . gene_id "ENSG00000207005.1"; transcript_id "ENSG00000207005.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-2"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-2"; level 3;
chr1 ENSEMBL transcript 17222475 17222638 . + . gene_id "ENSG00000207005.1"; transcript_id "ENST00000384278.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-2"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-2-201"; level 3; tag "basic";
chr1 ENSEMBL exon 17222475 17222638 . + . gene_id "ENSG00000207005.1"; transcript_id "ENST00000384278.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-2"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-2-201"; exon_number 1; exon_id "ENSE00001806888.1"; level 3; tag "basic";
......@@ -118,6 +122,8 @@ chr1 ENSEMBL exon 28470667 28470728 . - . gene_id "ENSG00000252429.1"; transcrip
chr1 ENSEMBL gene 28807874 28807992 . + . gene_id "ENSG00000221216.1"; transcript_id "ENSG00000221216.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6ATAC27P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6ATAC27P"; level 3;
chr1 ENSEMBL transcript 28807874 28807992 . + . gene_id "ENSG00000221216.1"; transcript_id "ENST00000408289.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6ATAC27P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6ATAC27P-201"; level 3; tag "basic";
chr1 ENSEMBL exon 28807874 28807992 . + . gene_id "ENSG00000221216.1"; transcript_id "ENST00000408289.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6ATAC27P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6ATAC27P-201"; exon_number 1; exon_id "ENSE00001564924.1"; level 3; tag "basic";
chr1 ENSEMBL transcript 28975112 28975245 . + . gene_id "ENSG00000270103.2"; transcript_id "ENST00000387069.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "RNU11"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU11-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000183994.1";
chr1 ENSEMBL exon 28975112 28975245 . + . gene_id "ENSG00000270103.2"; transcript_id "ENST00000387069.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "RNU11"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU11-201"; exon_number 1; exon_id "ENSE00001502075.1"; level 3; tag "basic"; havana_gene "OTTHUMG00000183994.1";
chr1 ENSEMBL gene 31970419 31970525 . - . gene_id "ENSG00000206981.1"; transcript_id "ENSG00000206981.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-40P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-40P"; level 3;
chr1 ENSEMBL transcript 31970419 31970525 . - . gene_id "ENSG00000206981.1"; transcript_id "ENST00000384254.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-40P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-40P-201"; level 3; tag "basic";
chr1 ENSEMBL exon 31970419 31970525 . - . gene_id "ENSG00000206981.1"; transcript_id "ENST00000384254.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-40P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-40P-201"; exon_number 1; exon_id "ENSE00001807466.1"; level 3; tag "basic";
......@@ -565,6 +571,8 @@ chr1 ENSEMBL exon 212865606 212865709 . + . gene_id "ENSG00000207491.1"; transcr
chr1 ENSEMBL gene 218303137 218303294 . + . gene_id "ENSG00000201493.1"; transcript_id "ENSG00000201493.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-141P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-141P"; level 3;
chr1 ENSEMBL transcript 218303137 218303294 . + . gene_id "ENSG00000201493.1"; transcript_id "ENST00000364623.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-141P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-141P-201"; level 3; tag "basic";
chr1 ENSEMBL exon 218303137 218303294 . + . gene_id "ENSG00000201493.1"; transcript_id "ENST00000364623.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU1-141P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU1-141P-201"; exon_number 1; exon_id "ENSE00001439386.1"; level 3; tag "basic";
chr1 ENSEMBL transcript 220999118 220999235 . + . gene_id "ENSG00000221571.2"; transcript_id "ENST00000408644.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "RNU6ATAC35P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6ATAC35P-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000185888.1";
chr1 ENSEMBL exon 220999118 220999235 . + . gene_id "ENSG00000221571.2"; transcript_id "ENST00000408644.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "RNU6ATAC35P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6ATAC35P-201"; exon_number 1; exon_id "ENSE00001565279.1"; level 3; tag "basic"; havana_gene "OTTHUMG00000185888.1";
chr1 ENSEMBL gene 222010676 222010779 . - . gene_id "ENSG00000200033.1"; transcript_id "ENSG00000200033.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-403P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-403P"; level 3;
chr1 ENSEMBL transcript 222010676 222010779 . - . gene_id "ENSG00000200033.1"; transcript_id "ENST00000363163.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-403P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-403P-201"; level 3; tag "basic";
chr1 ENSEMBL exon 222010676 222010779 . - . gene_id "ENSG00000200033.1"; transcript_id "ENST00000363163.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-403P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-403P-201"; exon_number 1; exon_id "ENSE00001437926.1"; level 3; tag "basic";
......@@ -4750,6 +4758,8 @@ chr17 ENSEMBL exon 20029701 20029801 . - . gene_id "ENSG00000212186.1"; transcri
chr17 ENSEMBL gene 20193570 20193671 . + . gene_id "ENSG00000252971.1"; transcript_id "ENSG00000252971.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-1057P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-1057P"; level 3;
chr17 ENSEMBL transcript 20193570 20193671 . + . gene_id "ENSG00000252971.1"; transcript_id "ENST00000517162.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-1057P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-1057P-201"; level 3; tag "basic";
chr17 ENSEMBL exon 20193570 20193671 . + . gene_id "ENSG00000252971.1"; transcript_id "ENST00000517162.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-1057P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-1057P-201"; exon_number 1; exon_id "ENSE00002089439.1"; level 3; tag "basic";
chr17 ENSEMBL transcript 20226314 20226423 . + . gene_id "ENSG00000266839.2"; transcript_id "ENST00000517027.1"; gene_type "sense_intronic"; gene_status "NOVEL"; gene_name "U6"; transcript_type "snRNA"; transcript_status "NOVEL"; transcript_name "U6.48-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000178568.2";
chr17 ENSEMBL exon 20226314 20226423 . + . gene_id "ENSG00000266839.2"; transcript_id "ENST00000517027.1"; gene_type "sense_intronic"; gene_status "NOVEL"; gene_name "U6"; transcript_type "snRNA"; transcript_status "NOVEL"; transcript_name "U6.48-201"; exon_number 1; exon_id "ENSE00002089304.1"; level 3; tag "basic"; havana_gene "OTTHUMG00000178568.2";
chr17 ENSEMBL gene 20797845 20797951 . - . gene_id "ENSG00000252483.1"; transcript_id "ENSG00000252483.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-1178P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-1178P"; level 3;
chr17 ENSEMBL transcript 20797845 20797951 . - . gene_id "ENSG00000252483.1"; transcript_id "ENST00000516674.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-1178P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-1178P-201"; level 3; tag "basic";
chr17 ENSEMBL exon 20797845 20797951 . - . gene_id "ENSG00000252483.1"; transcript_id "ENST00000516674.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-1178P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-1178P-201"; exon_number 1; exon_id "ENSE00002088951.1"; level 3; tag "basic";
......@@ -4807,6 +4817,8 @@ chr17 ENSEMBL exon 40592216 40592277 . - . gene_id "ENSG00000238704.1"; transcri
chr17 ENSEMBL gene 41043355 41043452 . - . gene_id "ENSG00000252039.1"; transcript_id "ENSG00000252039.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-287P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-287P"; level 3;
chr17 ENSEMBL transcript 41043355 41043452 . - . gene_id "ENSG00000252039.1"; transcript_id "ENST00000516230.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-287P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-287P-201"; level 3; tag "basic";
chr17 ENSEMBL exon 41043355 41043452 . - . gene_id "ENSG00000252039.1"; transcript_id "ENST00000516230.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-287P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-287P-201"; exon_number 1; exon_id "ENSE00002088507.1"; level 3; tag "basic";
chr17 ENSEMBL transcript 41464594 41464785 . - . gene_id "ENSG00000188825.9"; transcript_id "ENST00000606190.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "LINC00910"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "LINC00910-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000180880.1";
chr17 ENSEMBL exon 41464594 41464785 . - . gene_id "ENSG00000188825.9"; transcript_id "ENST00000606190.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "LINC00910"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "LINC00910-201"; exon_number 1; exon_id "ENSE00003697055.1"; level 3; tag "basic"; havana_gene "OTTHUMG00000180880.1";
chr17 ENSEMBL gene 41473361 41473459 . - . gene_id "ENSG00000252882.1"; transcript_id "ENSG00000252882.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-1137P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-1137P"; level 3;
chr17 ENSEMBL transcript 41473361 41473459 . - . gene_id "ENSG00000252882.1"; transcript_id "ENST00000517073.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-1137P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-1137P-201"; level 3; tag "basic";
chr17 ENSEMBL exon 41473361 41473459 . - . gene_id "ENSG00000252882.1"; transcript_id "ENST00000517073.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-1137P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-1137P-201"; exon_number 1; exon_id "ENSE00002089350.1"; level 3; tag "basic";
......@@ -5434,6 +5446,8 @@ chr22 ENSEMBL exon 42118047 42118135 . - . gene_id "ENSG00000252603.1"; transcri
chr22 ENSEMBL gene 42965153 42965256 . - . gene_id "ENSG00000251913.1"; transcript_id "ENSG00000251913.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-513P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-513P"; level 3;
chr22 ENSEMBL transcript 42965153 42965256 . - . gene_id "ENSG00000251913.1"; transcript_id "ENST00000516104.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-513P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-513P-201"; level 3; tag "basic";
chr22 ENSEMBL exon 42965153 42965256 . - . gene_id "ENSG00000251913.1"; transcript_id "ENST00000516104.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-513P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-513P-201"; exon_number 1; exon_id "ENSE00002088381.1"; level 3; tag "basic";
chr22 ENSEMBL transcript 43011250 43011399 . + . gene_id "ENSG00000270022.2"; transcript_id "ENST00000362512.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "RNU12"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU12-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000183993.1";
chr22 ENSEMBL exon 43011250 43011399 . + . gene_id "ENSG00000270022.2"; transcript_id "ENST00000362512.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "RNU12"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU12-201"; exon_number 1; exon_id "ENSE00001437275.1"; level 3; tag "basic"; havana_gene "OTTHUMG00000183993.1";
chr22 ENSEMBL gene 46020411 46020512 . - . gene_id "ENSG00000251985.1"; transcript_id "ENSG00000251985.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-1161P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-1161P"; level 3;
chr22 ENSEMBL transcript 46020411 46020512 . - . gene_id "ENSG00000251985.1"; transcript_id "ENST00000516176.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-1161P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-1161P-201"; level 3; tag "basic";
chr22 ENSEMBL exon 46020411 46020512 . - . gene_id "ENSG00000251985.1"; transcript_id "ENST00000516176.1"; gene_type "snRNA"; gene_status "KNOWN"; gene_name "RNU6-1161P"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU6-1161P-201"; exon_number 1; exon_id "ENSE00002088453.1"; level 3; tag "basic";
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