Commit 6f921c28 authored by Venkat Malladi's avatar Venkat Malladi
Browse files

Update the script.

parent 6667781d
#!/bin/bash
#SBATCH --job-name=rsem_diff
#SBATCH --partition=super
#SBATCH --nodes=1
#SBATCH --time=0-24:00:00
#SBATCH --output=rsem_diff.%j.out
#SBATCH --error=rsem_diff.%j.err
#SBATCH --mail-user=venkat.malladi@utsouthwestern.edu
#SBATCH --mail-type=ALL
./RSEM/rsem-run-ebseq /Volumes/project/GCRB/Lee_Lab/s163035/DK_RIP-seq/gene_matrix/ALK.txt 2,2 diff_genes/ALK.results
module load iGenomes/2013-03-25
module load RSEM/1.2.31
./RSEM/rsem-run-ebseq /Volumes/project/GCRB/Lee_Lab/s163035/DK_RIP-seq/gene_matrix/ALKT.txt 2,2 diff_genes/ALKT.results
rsem-run-ebseq /project/GCRB/Lee_Lab/s163035/DK_RIP-seq/gene_matrix/ALK.txt 2,2 /project/GCRB/Lee_Lab/s163035/DK_RIP-seq/diff_genes/ALK.results
./RSEM/rsem-run-ebseq /Volumes/project/GCRB/Lee_Lab/s163035/DK_RIP-seq/gene_matrix/MLK.txt 2,2 diff_genes/MLK.results
rsem-run-ebseq /project/GCRB/Lee_Lab/s163035/DK_RIP-seq/gene_matrix/ALKT.txt 2,2 /project/GCRB/Lee_Lab/s163035/DK_RIP-seq/diff_genes/ALKT.results
rsem-run-ebseq /project/GCRB/Lee_Lab/s163035/DK_RIP-seq/gene_matrix/MLK.txt 2,2 /project/GCRB/Lee_Lab/s163035/DK_RIP-seq/diff_genes/MLK.results
rsem-run-ebseq /project/GCRB/Lee_Lab/s163035/DK_RIP-seq/gene_matrix/MLKEtxt 2,2 /project/GCRB/Lee_Lab/s163035/DK_RIP-seq/diff_genes/MLKE.results
./RSEM/rsem-run-ebseq /Volumes/project/GCRB/Lee_Lab/s163035/DK_RIP-seq/gene_matrix/MLKE.txt 2,2 diff_genes/MLKE.results
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