Modify container configs to use centos8 for wordcounts

astrocyte_pkg.yml

@@ -66,6 +66,12 @@ documentation_files:
 # Specify versioned module names to ensure reproducability.
 workflow_modules:
   - Test
+# A list of container images requires to run this workflow.
+# Specify full path and version names to ensure reproducability.
+# This keyword is required when 'container' is specified in Astrocyte 0.4.1 and above
+workflow_containers:
+  - docker://ubuntu:latest
+  - docker://centos:centos8
 
 # A list of parameters used by the workflow, defining how to present them,
 # options etc in the web interface. For each parameter:

workflow/configs/biohpc_docker.config

@@ -13,6 +13,6 @@ process {
         container = 'ubuntu:latest'
     }
     withName:wordcounts {
-        container = 'ubuntu:latest'
+        container = 'centos:centos8'
     }
 }

workflow/configs/biohpc_docker_gitlab.config

@@ -13,6 +13,6 @@ process {
         container = 'git.biohpc.swmed.edu:5050/s190450/astrocyte_example_wordcount/ubuntu:latest'
     }
     withName:wordcounts {
-        container = 'git.biohpc.swmed.edu:5050/s190450/astrocyte_example_wordcount/ubuntu:latest'
+        container = 'git.biohpc.swmed.edu:5050/s190450/astrocyte_example_wordcount/centos:centos8'
     }
 }

workflow/configs/biohpc_singularity.config

@@ -13,6 +13,6 @@ process {
         container = 'ubuntu:latest'
     }
     withName:wordcounts {
-        container = 'ubuntu:latest'
+        container = 'centos:centos8'
     }
 }

workflow/configs/biohpc_singularity_gitlab.config

@@ -17,6 +17,6 @@ process {
         container = 'docker://git.biohpc.swmed.edu:5050/s190450/astrocyte_example_wordcount/ubuntu:latest'
     }
     withName:wordcounts {
-        container = 'docker://git.biohpc.swmed.edu:5050/s190450/astrocyte_example_wordcount/ubuntu:latest'
+        container = 'docker://git.biohpc.swmed.edu:5050/s190450/astrocyte_example_wordcount/centos:centos8'
     }
 }