Commits · master · Holly Ruess / celseq2

12 Oct, 2018 1 commit
- 💊 fixing aQual is nonessential and conflicts with ALN_QUAL_MIN=0 · 2294a50d
  Puriney authored Oct 12, 2018
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Revert "💊 fix corner case where alignment has no aQual score"

This reverts commit c4effa6d.
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  2294a50d
11 Oct, 2018 1 commit
- 💊 change version number · 1a353cb0
  Puriney authored Oct 11, 2018
  
  1a353cb0
09 Oct, 2018 1 commit
- 💊 fix corner case where alignment has no aQual score · c4effa6d
  Puriney authored Oct 09, 2018
  
  c4effa6d
07 Oct, 2018 1 commit
- 💊 snakemake (v>=5.2.2) deprecate offering timestamp parameter · c26b7880
  Puriney authored Oct 07, 2018
  
  c26b7880
11 Aug, 2018 1 commit
- set BC_SEQ_COLUMN=1 to avoid confusion #25 · 71d66c04
  Yun YAN authored Aug 11, 2018
  
  71d66c04
15 Jul, 2018 1 commit
- Merge pull request #23 from Puriney/master · 1d73626d
  Yun YAN authored Jul 15, 2018
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update
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  1d73626d
20 Jun, 2018 1 commit
- 💊 arguments too long error 7 · 7bc05813
  yy1533 authored Jun 20, 2018
  
  7bc05813
01 Jun, 2018 1 commit
- 💪 enable demultiplexing run as tagging mode · efc58048
  yy1533 authored Jun 01, 2018
  
  efc58048
30 May, 2018 1 commit
- 💊 ST coord name is x-y instead of row-col · 5ce3bcaa
  yy1533 authored May 30, 2018
  
  5ce3bcaa
29 May, 2018 1 commit
- 🐶 possible codes to i) improve workflow modulization ii) support kallisto · fa9574f9
  yy1533 authored May 29, 2018
  
  fa9574f9
10 May, 2018 4 commits
- 📚 · 2db56b1b
  yy1533 authored May 10, 2018
  
  2db56b1b
- 🇨🇳 v0.5.3 Merge pull request #22 from Puriney/master · 2be19547
  Yun YAN authored May 10, 2018
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v0.5.3
```
  2be19547
- 🐶 add in-line comments · 457245e1
  yy1533 authored May 10, 2018
  
  457245e1
- 🍺 cell name has bc id attached; 🍺 merge plotly for alignment.html to the pipeline · 805d6d05
  yy1533 authored May 10, 2018
  
  805d6d05
09 May, 2018 2 commits
- 🍻 plotly graph on the alignment stats · 5f9bc606
  yy1533 authored May 09, 2018
  
  5f9bc606
- 💊 forgot to claim the value is median · 0493caa7
  yy1533 authored May 09, 2018
  
  0493caa7
08 May, 2018 3 commits
- 💪 plotly graph on demultiplexing fastqs · f7f3388f
  yy1533 authored May 08, 2018
  
  f7f3388f
- 💊 plotly graph on demultiplexing fastqs · cfebaf2f
  yy1533 authored May 08, 2018
  
  cfebaf2f
- 🍻 plotly graph on demultiplexing fastqs · f11f7835
  yy1533 authored May 08, 2018
  
  f11f7835
07 May, 2018 1 commit
- 🐶 add in-line comment · ad95a9d3
  yy1533 authored May 07, 2018
  
  ad95a9d3
16 Apr, 2018 4 commits
- 🇨🇳 release v0.5.2 · 1839866a
  Yun YAN authored Apr 16, 2018
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v0.5.2-b
```
  1839866a
- 🍺 Solve #10. 💪 QC is available when mt genes are not present · b044f324
  yy1533 authored Apr 16, 2018
  
  b044f324
- Merge pull request #18 from Puriney/master · 81fad008
  Yun YAN authored Apr 16, 2018
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v0.5.2
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  81fad008
- 🍻 release QC plots · c69fb44b
  yy1533 authored Apr 16, 2018
  
  c69fb44b
13 Apr, 2018 1 commit
- 🍺 command line to generate QC figures for both expr.csv and ST.tsv · e07f8cf7
  yy1533 authored Apr 13, 2018
  
  e07f8cf7
06 Apr, 2018 4 commits
- Merge pull request #17 from Puriney/master · 86012144
  Yun YAN authored Apr 06, 2018
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0.5.1
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  86012144
- 🐾 · 4a9d0080
  yy1533 authored Apr 06, 2018
  
  4a9d0080
- 💊 · d8ef52fb
  yy1533 authored Apr 06, 2018
  
  d8ef52fb
- 💪 demultipelxing_sam will have all the claimed bc. demultiplex-sam... · 3c0a5651
  yy1533 authored Apr 06, 2018
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💪 demultipelxing_sam will have all the claimed bc. demultiplex-sam command has option to run in either claimed bc mode or gnerate whatever it has
```
  3c0a5651
05 Apr, 2018 3 commits
- 🐶 reveal the hidden (dot folders) intermediate folders to users since ... · ffe03c52
  yy1533 authored Apr 05, 2018
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🐶 reveal the hidden (dot folders) intermediate folders to users since  --keep-temp is implemented
```
  ffe03c52
- 📖 update doc · b01afe62
  yy1533 authored Apr 05, 2018
  
  b01afe62
- 🐶 add inline comment to highlight the robustness of ST. This is also proved by actual runtime · 54968425
  yy1533 authored Apr 05, 2018
  
  54968425
04 Apr, 2018 5 commits
- 💪 keep annotation · 310ae513
  yy1533 authored Apr 05, 2018
  
  310ae513
- 🍺 0.5.1 Stable version · 0a73460c
  yy1533 authored Apr 05, 2018
  
  0a73460c
- 🐶 delete legacy code · 356dc327
  yy1533 authored Apr 04, 2018
  
  356dc327
- 🍻 release 0.5.0 : Fully avoid the memory limitation by server · f03e1ffa
  yy1533 authored Apr 04, 2018
  
  f03e1ffa
- 🐾 Change the strategy · 7d3a8429
  yy1533 authored Apr 04, 2018
  
  7d3a8429
03 Apr, 2018 2 commits
- Merge branch 'master' of github.com:yanailab/celseq2 · 3833f465
  yy1533 authored Apr 03, 2018
  
  3833f465
- 🐾 hide intermediate files; support temp() to mask files · 168aaa3f
  yy1533 authored Apr 03, 2018
  
  168aaa3f
02 Apr, 2018 1 commit
- Merge pull request #16 from Puriney/master · 51c02b7d
  Yun YAN authored Apr 02, 2018
```
0.4.8
```
  51c02b7d