Commit d8ef52fb authored by yy1533's avatar yy1533

💊

parent 3c0a5651
......@@ -105,9 +105,10 @@ def get_argument_parser():
action="store_true",
help="Do not check for incomplete output files.")
parser.add_argument(
"--notemp", "--nt",
"--keep-temp", dest='keep_temp',
action="store_true",
help="Ignore temp() declarations.")
help="Keep the intermediate files after run.")
parser.set_defaults(keep_temp=False)
parser.add_argument(
"--version", "-v",
action="version",
......@@ -130,7 +131,8 @@ def main():
config={'output_dir': args.output_dir,
'experiment_table': args.experiment_table,
'stranded': stranded,
'run_celseq2_to_st': args.celseq2_to_st},
'run_celseq2_to_st': args.celseq2_to_st,
'keep_intermediate': args.keep_temp},
printshellcmds=True,
printreason=True,
......@@ -150,7 +152,7 @@ def main():
force_incomplete=args.rerun_incomplete,
ignore_incomplete=args.ignore_incomplete,
notemp=args.notemp)
notemp=args.keep_temp)
sys.exit(0 if success else 1)
......
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