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Holly Ruess
celseq2
Commits
c4effa6d
Commit
c4effa6d
authored
Oct 09, 2018
by
Puriney
Browse files
💊
fix corner case where alignment has no aQual score
parent
c26b7880
Changes
1
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Inline
Side-by-side
celseq2/count_umi.py
View file @
c4effa6d
...
...
@@ -63,7 +63,7 @@ def count_umi(sam_fpath, features, stranded='yes',
except
KeyError
:
pass
if
aln
.
aQual
<
accept_aln_qual_min
:
if
not
aln
.
aQual
or
aln
.
aQual
<
accept_aln_qual_min
:
aln_cnt
[
"_low_map_qual"
]
+=
1
continue
...
...
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