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Holly Ruess
celseq2
Commits
b01afe62
Commit
b01afe62
authored
Apr 05, 2018
by
yy1533
Browse files
📖
update doc
parent
54968425
Changes
2
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docs/about/release_note.md
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b01afe62
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@@ -10,6 +10,34 @@
---
## :fa-flag-checkered: **v0.5.1**
:fa-calendar:
**2018-04-05**
:fa-star:
**Features**
-
Get rid of the possible limitation about "shared memory" when STAR is used on
servers.
-
SpatialTranscriptomics (ST) processing is able to use STAR aligner practically.
-
Optionally remove intermediate files in a robust way.
---
## :fa-flag-checkered: **v0.4.8**
:fa-calendar:
**2018-03-26**
:fa-star:
**Features**
-
Robust selection on type of genes, e.g., protein coding, lincRNA.
-
Handle the case when all genes are needed.
-
The gene names are consistent to the in-house inDrop pipeline using
`genometools`
.
-
Handle the GTF/GFF where "gene_biotype" attribute is not available.
-
Automatically remove intermediate files by
`snakemake`
's
`temp()`
function.
---
## :fa-flag-checkered: **v0.4.7**
:fa-calendar:
**2018-03-23**
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...
@@ -54,7 +82,8 @@
:fa-star: **Features**
-
More general API to specify UMI-BC design.
-
Support [st_pipeline](https://github.com/SpatialTranscriptomicsResearch/st_pipeline).
-
Support
[st_pipeline](https://github.com/SpatialTranscriptomicsResearch/st_pipeline).
---
...
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docs/about/support_others.md
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b01afe62
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@@ -6,4 +6,5 @@ principles of the UMI and cell barcodes.
1.
Spatial transcriptome data.
`celseq2`
works similar to
[
st_pipeline
](
https://github.com/SpatialTranscriptomicsResearch/st_pipeline
)
,
except that
`celseq2`
uses Bowtie2 for aligment while
`st_pipeline`
uses STAR.
\ No newline at end of file
except that
`celseq2`
uses Bowtie2 for aligment while
`st_pipeline`
uses STAR.
After version 0.5.1
`celseq2`
is able to use STAR for ST as well.
\ No newline at end of file
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