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Holly Ruess
celseq2
Commits
933ebcae
Commit
933ebcae
authored
Feb 13, 2018
by
yy1533
Browse files
📖
fix broken link. Close #6
parent
55f1e0ba
Changes
1
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README.md
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933ebcae
...
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@@ -60,9 +60,9 @@ new-configuration-file -o /path/to/wonderful_CEL-Seq2_config.yaml
Example of configuration is
[
here
](
https://github.com/yanailab/celseq2/blob/master/example/config.yaml
)
.
Example of CEL-Seq2 cell barcodes sequence dictionary is
[
here
](
https://git
la
b.com/yanailab/celseq2/blob/master/example/barcodes_cel-seq_umis96.tab
)
.
Example of CEL-Seq2 cell barcodes sequence dictionary is
[
here
](
https://git
hu
b.com/yanailab/celseq2/blob/master/example/barcodes_cel-seq_umis96.tab
)
.
Read
[
"Setup Configuration"
](
https://
puriney
.github.io/celseq2/user_guide/setup_config/
)
Read
[
"Setup Configuration"
](
https://
yanailab
.github.io/celseq2/user_guide/setup_config/
)
for full instructions.
### Step-2: Define Experiment Table
...
...
@@ -85,7 +85,7 @@ The content of experiment table in this example could be:
| wonderful_experiment1 | 1-9 | path/to/lane2-R1.fastq.gz | path/to/lane2-R2.fastq.gz |
| wonderful_experiment2 | 10-18 | path/to/lane2-R1.fastq.gz | path/to/lane2-R2.fastq.gz |
Read
[
"Experiment Table Specification"
](
https://
puriney
.github.io/celseq2/user_guide/experiment_table/
)
Read
[
"Experiment Table Specification"
](
https://
yanailab
.github.io/celseq2/user_guide/experiment_table/
)
for full instructions when more complexed experiment designs take place.
### Step-3: Run Pipeline of `celseq2`
...
...
@@ -99,7 +99,7 @@ celseq2 --config-file /path/to/wonderful_CEL-Seq2_config.yaml \
-j
10
```
Read
[
"Launch Pipeline"
](
https://
puriney
.github.io/celseq2/user_guide/launch_pipeline/
)
Read
[
"Launch Pipeline"
](
https://
yanailab
.github.io/celseq2/user_guide/launch_pipeline/
)
for full instructions to see how to submit jobs to cluster, or preview how many
tasks are going to be scheduled.
...
...
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