Commit 933ebcae authored by yy1533's avatar yy1533
Browse files

📖 fix broken link. Close #6

parent 55f1e0ba
......@@ -60,9 +60,9 @@ new-configuration-file -o /path/to/wonderful_CEL-Seq2_config.yaml
Example of configuration is [here](https://github.com/yanailab/celseq2/blob/master/example/config.yaml).
Example of CEL-Seq2 cell barcodes sequence dictionary is [here](https://gitlab.com/yanailab/celseq2/blob/master/example/barcodes_cel-seq_umis96.tab).
Example of CEL-Seq2 cell barcodes sequence dictionary is [here](https://github.com/yanailab/celseq2/blob/master/example/barcodes_cel-seq_umis96.tab).
Read ["Setup Configuration"](https://puriney.github.io/celseq2/user_guide/setup_config/)
Read ["Setup Configuration"](https://yanailab.github.io/celseq2/user_guide/setup_config/)
for full instructions.
### Step-2: Define Experiment Table
......@@ -85,7 +85,7 @@ The content of experiment table in this example could be:
| wonderful_experiment1 | 1-9 | path/to/lane2-R1.fastq.gz | path/to/lane2-R2.fastq.gz |
| wonderful_experiment2 | 10-18 | path/to/lane2-R1.fastq.gz | path/to/lane2-R2.fastq.gz |
Read ["Experiment Table Specification"](https://puriney.github.io/celseq2/user_guide/experiment_table/)
Read ["Experiment Table Specification"](https://yanailab.github.io/celseq2/user_guide/experiment_table/)
for full instructions when more complexed experiment designs take place.
### Step-3: Run Pipeline of `celseq2`
......@@ -99,7 +99,7 @@ celseq2 --config-file /path/to/wonderful_CEL-Seq2_config.yaml \
-j 10
```
Read ["Launch Pipeline"](https://puriney.github.io/celseq2/user_guide/launch_pipeline/)
Read ["Launch Pipeline"](https://yanailab.github.io/celseq2/user_guide/launch_pipeline/)
for full instructions to see how to submit jobs to cluster, or preview how many
tasks are going to be scheduled.
......
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