Commit 364c1657 authored by yy1533's avatar yy1533
Browse files

📖 🐾 user_guide: storage.

parent 53868d44
# Run pipeline
Learn about how it is easy to launch pipeline in both local computer and server.
Learn about how it is easy to launch pipeline in all the ways users want.
---
......
# Storage Management
Learn how to reduce storage while maintaing the results.
---
To reduce the storage of project, it is suggested to get rid of intermediate
files, in particular FASTQ and SAM files.
Remove all FASTQ and SAM files generated by `celseq2`.
```
celseq2 --config-file /path/to/wonderful_CEL-Seq2_config.yaml \
--experiment-table /path/to/wonderful_experiment_table.txt \
--output-dir /path/to/result_dir \
-j 10 clean_FQ_SAM
```
Alternatively, user can gzip FASTQ and convert SAM to BAM:
```
celseq2-slim --project-dir /path/to/result_dir --dryrun
celseq2-slim --project-dir /path/to/result_dir
```
\ No newline at end of file
......@@ -35,6 +35,7 @@ pages:
- 'Setup configuration': 'user_guide/setup_config.md'
- 'Specify experiment table': 'user_guide/experiment_table.md'
- 'Launch pipeline': 'user_guide/launch_pipeline.md'
- 'Storage management': 'user_guide/storage.md'
- About:
- 'Reproducibility': 'about/reproducibility.md'
- 'Performance': 'about/performance.md'
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment