Commit 2a99bebe authored by yy1533's avatar yy1533
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parent 16c8d746
......@@ -100,8 +100,8 @@ instructions.
## Easy to request resources
It is straightforward to run the pipeline of celseq2 by submitting jobs to
cluster, as celseq2 is built on top of snakemake which is a powerful workflow
It is straightforward to run the pipeline of `celseq2` by submitting jobs to
cluster, as `celseq2` is built on top of `snakemake` which is a powerful workflow
management framework.
For example, user could run the following command to submit jobs to computing
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......@@ -12,7 +12,7 @@
:star: Thanks for your interest. We suggest follow "Guidelines to submit a Pull
Request" of `mxnet`
(see [here](https://mxnet.incubator.apache.org/community/contribute.html#guidelines-to-submit-a-pull-request])).
(see [here](https://github.com/apache/incubator-mxnet/blob/b6b8da0ac2b1ef8b84089458c757ce8b19aab0d7/docs/community/contribute.md#guidelines-to-submit-a-pull-request])).
:question: How to contribute to user manuals?
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......@@ -20,7 +20,8 @@ the experiment design as same as the
[sample sheet](https://github.com/yanailab/CEL-Seq-pipeline/blob/133912cd4ceb20af0c67627ab883dfce8b9668df/sample_sheet_example.txt)
used in last generation of the pipeline ([CEL-Seq-pipeline](https://github.com/yanailab/CEL-Seq-pipeline)) as example.
![experiment-old-pipeline-visualize](https://i.imgur.com/ntJVTYM.gif)
<!-- ![experiment-old-pipeline-visualize](https://i.imgur.com/ntJVTYM.gif) -->
<img src="https://i.imgur.com/ntJVTYM.gif" height="400">
The user had two biological samples which could come from two different
experiments, two time-points, two types of tissues, or even two labs. They were
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