Commit 2294a50d authored by Puriney's avatar Puriney
Browse files

💊 fixing aQual is nonessential and conflicts with ALN_QUAL_MIN=0

Revert "💊 fix corner case where alignment has no aQual score"

This reverts commit c4effa6d.
parent 1a353cb0
...@@ -63,7 +63,7 @@ def count_umi(sam_fpath, features, stranded='yes', ...@@ -63,7 +63,7 @@ def count_umi(sam_fpath, features, stranded='yes',
except KeyError: except KeyError:
pass pass
if not aln.aQual or aln.aQual < accept_aln_qual_min: if aln.aQual < accept_aln_qual_min:
aln_cnt["_low_map_qual"] += 1 aln_cnt["_low_map_qual"] += 1
continue continue
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