support_others.md 523 Bytes
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# List of supported techniques

Though `celseq2` is dedicated to process CEL-Seq2 sequencing data, it is also
compatible to data generated in following contexts, because of the similar design
principles of the UMI and cell barcodes.

1. Spatial transcriptome data. `celseq2` works similar to
   [st_pipeline](https://github.com/SpatialTranscriptomicsResearch/st_pipeline),
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   except that `celseq2` uses Bowtie2 for aligment while `st_pipeline` uses STAR.
   After version 0.5.1 `celseq2` is able to use STAR for ST as well.