Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
P
process_scripts
Manage
Activity
Members
Labels
Plan
Issues
0
Issue boards
Milestones
Iterations
Wiki
Requirements
Code
Merge requests
1
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Locked files
Build
Pipelines
Jobs
Pipeline schedules
Test cases
Artifacts
Deploy
Releases
Container Registry
Operate
Environments
Monitor
Incidents
Service Desk
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Code review analytics
Issue analytics
Insights
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
NGS CLIA Lab
process_scripts
Repository
bug fixes new workflow
Brandi Cantarel
authored
5 years ago
920b85d5
d8b854586b090241e6bae842bb4e30d1df98a505
Select Git revision
Branches
5
master
default
idt_devel
2-patch_fix
1-ReferenceGenerator
phg_workflow_ps
Tags
20
version_1.0.7
version_1.0.6
version_1.0.5
version_1.0.4
version_1.0.3
version_1.0.2
publish_0.2.0
publish_0.1.4
publish_0.1.3
publish_0.1.2
publish_0.1.1
publish_0.1.0
publish_0.0.10
publish_0.0.9
publish_0.0.8
publish_0.0.7
publish_0.0.6
publish_0.0.5
publish_0.0.4
publish_0.0.3
process_scripts
variants
Compare
History
Find file
Code
Clone with SSH
Clone with HTTPS
Open in your IDE
Visual Studio Code (SSH)
Visual Studio Code (HTTPS)
IntelliJ IDEA (SSH)
IntelliJ IDEA (HTTPS)
Download source code
zip
tar.gz
tar.bz2
tar
Download this directory
zip
tar.gz
tar.bz2
tar
Select Archive Format
Download source code
zip
tar.gz
tar.bz2
tar
Copy HTTPS clone URL
Copy SSH clone URL
git@git.biohpc.swmed.edu:ngsclialab/process_scripts.git
Copy HTTPS clone URL
https://git.biohpc.swmed.edu/ngsclialab/process_scripts.git
Name
Last commit
Last update
..
add_readct_shimmer.pl
addgt_virmid.pl
annot_sv.pl
annotvcf.sh
cnvkit.sh
filter_cnvkit.pl
filter_pindel.pl
gatkrunner.sh
germline_vc.sh
lca.R
norm_annot.sh
parse_pindel.pl
parse_svresults.pl
pindel.sh
somatic_callers.sh
somatic_vc.sh
svannot.pl
svcalling.sh
transvar2bed.pl
uni_norm_annot.sh
uniform_integrated_vcf.pl
uniform_vcf_gt.pl
union.sh
unionvcf.pl
vcf2bed.pl
vcf2bed.sv.pl
vcfsorter.pl
