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NGS CLIA Lab
process_scripts
Repository
simplifying qc stats
Brandi Cantarel
authored
4 years ago
c2f6bdd7
5332c4bf516e55885e54db31243229e2aa149b80
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process_scripts
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add_umi_bam.py
add_umi_sam.py
bam2tdf.sh
bamqc.sh
bamqc_dna.pl
bamqc_rna.pl
calculate_depthcov.pl
convert_reads.py
covstats.pl
dnaseqalign.sh
filter_genefusions.pl
filter_viral_idxstats.pl
hisat_genotype.sh
indexbams.sh
map_qc.py
map_reads.py
markdups.sh
plot_hist_genocov.R
rnaseqalign.sh
starfusion.sh
subset_bam.pl
virusalign.sh
