From fe773ff8e04bcacb8c0601768bf1d97dc6926b09 Mon Sep 17 00:00:00 2001 From: Brandi Cantarel <brandi.cantarel@utsouthwestern.edu> Date: Tue, 26 May 2020 20:10:19 -0500 Subject: [PATCH] add Callset to vcfheader union.sh --- variants/union.sh | 2 ++ 1 file changed, 2 insertions(+) diff --git a/variants/union.sh b/variants/union.sh index 8ecfe87..a02cd2c 100755 --- a/variants/union.sh +++ b/variants/union.sh @@ -48,6 +48,8 @@ for i in ${dir}/*.vcf.gz; do done echo "##fileformat=VCFv4.2" > header.vcf +echo "##INFO=<ID=CallSet,Number='.',Type=String,Description=\"Caller\">" >> header.vcf +echo "##INFO=<ID=CallSetInconsistent,Number=1,Type=Integer,Description=\"Caller Inconsistency Manual Inspection\">" >> header.vcf zcat ${dir}/*.vcf.gz |grep "##" |grep -v '#fileformat' |sort -u |grep 'ALT\|FILTER\|FORMAT\|INFO' >> header.vcf perl $baseDir/unionvcf.pl header.vcf $list2 -- GitLab