diff --git a/variants/svcalling.sh b/variants/svcalling.sh
index b139bdfd12a61b99f9f0c9b64bea79b9bf7d0486..75a062d9854fbf9a953f8eed94de35359dbe5f19 100755
--- a/variants/svcalling.sh
+++ b/variants/svcalling.sh
@@ -154,7 +154,7 @@ fi
 if [[ $method == 'itdseek' ]]
 then
     stexe=`which samtools`
-    samtools view -@ $NPROC -L ${bed} ${sbam} | /project/shared/bicf_workflow_ref/seqprg/itdseek-1.2/itdseek.pl --refseq ${reffa} --samtools ${stexe} --bam ${sbam} | vcf-sort | bedtools intersect -header -b ${bed} -a stdin | bgzip > ${pair_id}.itdseek.vcf.gz
+    samtools view -@ $NPROC -L ${bed} ${sbam} | itdseek.pl --refseq ${reffa} --samtools ${stexe} --bam ${sbam} | vcf-sort | bedtools intersect -header -b ${bed} -a stdin | bgzip > ${pair_id}.itdseek.vcf.gz
 
     tabix ${pair_id}.itdseek.vcf.gz
     bcftools norm --fasta-ref $reffa -m - -Ov ${pair_id}.itdseek.vcf.gz | java -Xmx30g -jar $SNPEFF_HOME/snpEff.jar -no-intergenic -lof -c $SNPEFF_HOME/snpEff.config ${snpeffgeno} - |bgzip > ${pair_id}.itdseek_tandemdup.vcf.gz