diff --git a/variants/norm_annot.sh b/variants/norm_annot.sh index 445ceab10508e20aab09264fd5aa3aa57af952a7..d282231782066cac93e8b0c7d3283cfc98718291 100755 --- a/variants/norm_annot.sh +++ b/variants/norm_annot.sh @@ -25,9 +25,11 @@ shift $(($OPTIND -1)) baseDir="`dirname \"$0\"`" if [[ -z $isdocker ]] - source /etc/profile.d/modules.sh - module load bedtools/2.26.0 samtools/gcc/1.8 bcftools/gcc/1.8 snpeff/4.3q +then + source /etc/profile.d/modules.sh + module load bedtools/2.26.0 samtools/gcc/1.8 bcftools/gcc/1.8 snpeff/4.3q fi + if [[ -a "${index_path}/genome.fa" ]] then reffa="${index_path}/genome.fa"