diff --git a/variants/svcalling.sh b/variants/svcalling.sh
index 0c3b97d85cd3c35dc2a7c739e54aef0d8124755e..b737b98abb0210a828a0ed67ab765ce23b03fa0c 100755
--- a/variants/svcalling.sh
+++ b/variants/svcalling.sh
@@ -110,7 +110,11 @@ then
     then
 	svaba run -p $NPROC -G ${reffa} -t ${sbam} -n ${normal} -a ${pair_id}
     else
-	svaba run -p $NPROC -G ${reffa} -t ${sbam} -a ${pair_id}
+	bamlist=''
+	for i in *.bam; do
+	    bamlist="$bamlist -t ${i}"
+	done
+	svaba run -p $NPROC -G ${reffa} -a ${pair_id} $bamlist
     fi
     #Create SV FILE
     vcf-concat ${pair_id}.svaba.unfiltered*sv.vcf | perl -pe 's/\.consensus|\.bam//g' | vcf-sort| bgzip > ${pair_id}.svaba.unfiltered.sv.vcf.gz