diff --git a/alignment/starfusion.sh b/alignment/starfusion.sh index dd962339fcf8f21615803c93a27b81b7fa80c9ec..cc0d8dfda4ef497503d6853906da14eef945f845 100644 --- a/alignment/starfusion.sh +++ b/alignment/starfusion.sh @@ -49,7 +49,7 @@ then mkdir $tmphome fi export TMP_HOME=$tmphome - index_path=${refgeno}/CTAT_lib_trinity/ + index_path=${refgeno}/CTAT_lib_trinity1.6 trinity /usr/local/src/STAR-Fusion/STAR-Fusion --min_sum_frags 3 --CPU $SLURM_CPUS_ON_NODE --genome_lib_dir ${index_path} --left_fq ${fq1} --right_fq ${fq2} --examine_coding_effect --output_dir ${pair_id}_star_fusion #cp ${pair_id}_star_fusion/star-fusion.fusion_predictions.abridged.tsv ${pair_id}.starfusion.txt cp ${pair_id}_star_fusion/star-fusion.fusion_predictions.abridged.coding_effect.tsv ${pair_id}.starfusion.txt