diff --git a/variants/uni_norm_annot.sh b/variants/uni_norm_annot.sh index 2fa40ac622be0154274a97b1fa889134e96fb3dd..ffb9c50f8bfe6d0cb059fd86fb87c5c6d493dd38 100755 --- a/variants/uni_norm_annot.sh +++ b/variants/uni_norm_annot.sh @@ -33,6 +33,10 @@ else usage fi +if [[ -z $snpeffgeno ]] +then + snpeffgeno='GRCh38.86' +fi source /etc/profile.d/modules.sh module load bedtools/2.26.0 samtools/1.6 bcftools/1.6 snpeff/4.3q