From 5d1e29c6b08c11e34693b0da96a17ccbebd188c0 Mon Sep 17 00:00:00 2001
From: Brandi Cantarel <brandi.cantarel@utsouthwestern.edu>
Date: Fri, 2 Mar 2018 16:03:01 -0600
Subject: [PATCH] update somatic_vcf.sh
---
variants/somatic_vc.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/variants/somatic_vc.sh b/variants/somatic_vc.sh
index 585d670..fe274ef 100644
--- a/variants/somatic_vc.sh
+++ b/variants/somatic_vc.sh
@@ -83,7 +83,7 @@ source /etc/profile.d/modules.sh
if [ $algo == 'strelka2' ]
then
- module load strelka/2.9.0 samtools/1.6 manta/1.3.1 snpeff/4.3q vcftools/0.1.14
+ module load strelka/2.8.3 samtools/1.6 manta/1.2.0 snpeff/4.3q vcftools/0.1.14
mkdir manta strelka
configManta.py --normalBam ${mnormal} --tumorBam ${mtumor} --referenceFasta ${reffa} --runDir manta
manta/runWorkflow.py -m local -j 8
--
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