diff --git a/variants/somatic_vc.sh b/variants/somatic_vc.sh index 585d670425a5f345268dc43b4080984705fe5510..fe274efb80d5fe61da59fa919a4184964b3232c2 100644 --- a/variants/somatic_vc.sh +++ b/variants/somatic_vc.sh @@ -83,7 +83,7 @@ source /etc/profile.d/modules.sh if [ $algo == 'strelka2' ] then - module load strelka/2.9.0 samtools/1.6 manta/1.3.1 snpeff/4.3q vcftools/0.1.14 + module load strelka/2.8.3 samtools/1.6 manta/1.2.0 snpeff/4.3q vcftools/0.1.14 mkdir manta strelka configManta.py --normalBam ${mnormal} --tumorBam ${mtumor} --referenceFasta ${reffa} --runDir manta manta/runWorkflow.py -m local -j 8