From 5000ba2b79d57829736e07ee437f244dca9fc990 Mon Sep 17 00:00:00 2001
From: Brandi Cantarel <brandi.cantarel@utsouthwestern.edu>
Date: Thu, 30 May 2019 15:01:19 -0500
Subject: [PATCH] round counts dea.R
---
genect_rnaseq/dea.R | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/genect_rnaseq/dea.R b/genect_rnaseq/dea.R
index 3d84563..d2509a9 100755
--- a/genect_rnaseq/dea.R
+++ b/genect_rnaseq/dea.R
@@ -25,7 +25,7 @@ genenames <- read.table(file="genenames.txt",header=TRUE,sep='\t')
tbl <- read.table('countTable.txt',header=TRUE,sep="\t")
tbl2 <- read.table('countTable.logCPM.txt',header=TRUE,sep="\t")
-ct <- tbl[,4:length(tbl)]
+ct <- round(tbl[,4:length(tbl)],0)
row.names(ct) <- tbl$ENSEMBL
samples<- names(ct)
--
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