diff --git a/variants/somatic_vc.sh b/variants/somatic_vc.sh index 1e90c8667b62bc1b8dfb9ee0fb9e23df83227854..2b71e0f4e671b83881054df00b697e378739477d 100644 --- a/variants/somatic_vc.sh +++ b/variants/somatic_vc.sh @@ -85,7 +85,7 @@ source /etc/profile.d/modules.sh if [ $algo == 'strelka2' ] then - module load strelka/2.9.0 samtools/1.6 manta/1.3.1 snpeff/4.3q vcftools/0.1.14 + module load strelka/2.8.3 samtools/1.6 manta/1.2.0 snpeff/4.3q vcftools/0.1.14 mkdir manta strelka configManta.py --normalBam ${mnormal} --tumorBam ${mtumor} --referenceFasta ${reffa} --runDir manta manta/runWorkflow.py -m local -j 8