From 41554a4dcd5ea7fd14383dad198192b263c2e4d8 Mon Sep 17 00:00:00 2001
From: Brandi Cantarel <brandi.cantarel@utsouthwestern.edu>
Date: Fri, 12 Jul 2019 14:56:36 -0500
Subject: [PATCH] qc skip when not necessary
---
alignment/bamqc.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/alignment/bamqc.sh b/alignment/bamqc.sh
index 18dbb9e..1656e5b 100644
--- a/alignment/bamqc.sh
+++ b/alignment/bamqc.sh
@@ -22,7 +22,7 @@ do
n) nuctype=$OPTARG;;
p) pair_id=$OPTARG;;
d) dedup=$OPTARG;;
- s) skiplc=1;
+ s) skiplc=1;;
h) usage;;
esac
done
--
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