diff --git a/alignment/bamqc.sh b/alignment/bamqc.sh
index 18dbb9ef6002425900a7c3aae83d5f635edba31e..1656e5bc6f7eb7b320eb8f72f24d4f24699bdc88 100644
--- a/alignment/bamqc.sh
+++ b/alignment/bamqc.sh
@@ -22,7 +22,7 @@ do
         n) nuctype=$OPTARG;;
         p) pair_id=$OPTARG;;
 	d) dedup=$OPTARG;;
-	s) skiplc=1;
+	s) skiplc=1;;
         h) usage;;
     esac
 done