From 1e6e1974dacae42d802ced06dc3e3bf4e928a43e Mon Sep 17 00:00:00 2001
From: Brandi Cantarel <brandi.cantarel@utsouthwestern.edu>
Date: Thu, 31 Jan 2019 08:57:13 -0600
Subject: [PATCH] integer concat_cts.pl
---
genect_rnaseq/concat_cts.pl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/genect_rnaseq/concat_cts.pl b/genect_rnaseq/concat_cts.pl
index b36bd22..3d50b3a 100755
--- a/genect_rnaseq/concat_cts.pl
+++ b/genect_rnaseq/concat_cts.pl
@@ -78,7 +78,7 @@ foreach $gene (keys %cts) {
}
$cpm = ($cts{$gene}{$sample}/$total{$sample})*1e6;
push @cpm, sprintf("%.2f",log2($cpm));
- push @line, $cts{$gene}{$sample};
+ push @line, sprintf("%.0f",$cts{$gene}{$sample});
}
my @sortct = sort {$b cmp $a} @cpm;
#next unless ($sortct[0] >= 1);
--
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